Validation

Validation methodology and results against cBioPortal datahub datasets.

How Validation Works

The vibe-vep compare command compares existing MAF annotations against fresh predictions. For each MAF variant, the tool:

Parses the variant and its existing annotation (consequence, gene, transcript ID)
Re-annotates the variant against all overlapping GENCODE transcripts
Selects the best matching annotation for comparison (see below)
Normalizes consequence terms and compares

Transcript Selection for Validation

When comparing against a MAF entry, the tool selects the best VEP annotation using this priority:

Exact transcript ID match — if the MAF specifies a transcript ID (e.g., ENST00000311936), use the annotation for that transcript. However, if the transcript’s biotype has changed between GENCODE versions (e.g., was protein_coding but is now retained_intron) and the MAF has a coding consequence, the match is skipped.
Same gene, best transcript — among annotations for the same gene (by Hugo symbol), prefer:
- Canonical transcripts (marked by GENCODE/Ensembl)
- Protein-coding biotypes over non-coding
- Higher-impact consequences (HIGH > MODERATE > LOW > MODIFIER)
Any transcript, best match — if no gene match, use the same ranking across all annotations.

Consequence Normalization

MAF files may use different consequence terms than SO standard. The validation normalizes both sides before comparison:

MAF to SO mapping: Missense_Mutation to missense_variant, Silent to synonymous_variant, etc.
Modifier stripping: Drops terms like non_coding_transcript_variant, NMD_transcript_variant, coding_sequence_variant, start_retained_variant, stop_retained_variant that are secondary modifiers when a higher-impact term is present
Splice normalization: Maps splice_donor_region_variant and splice_donor_5th_base_variant to splice_region_variant; drops splice_region_variant when a primary consequence is present
Impact-based stripping: Drops intron_variant when splice donor/acceptor is present; drops UTR terms when a HIGH-impact term is present; drops stop_gained/stop_lost when co-occurring with frameshift_variant
Inframe grouping: Normalizes protein_altering_variant, inframe_deletion, and inframe_insertion to a common term
Upstream/downstream tolerance: MAF upstream/downstream calls are always accepted as matching, since different canonical transcript sets produce different transcript boundaries
Sorting: Comma-separated terms are sorted alphabetically for consistent comparison

Datahub Benchmark

Comprehensive validation against cBioPortal/datahub MAF annotations across both assemblies:

Tier	Assembly	Studies	Variants	Conseq Match	Time
`datahub_gdc`	GRCh38	32	2,489,269	99.8%	~2 min
`datahub_all`	GRCh37	431	30,612,130	99.7%	~19 min
Total		463	~33M	99.7%	~21 min

Corner Case Tests

66 unit tests covering all mismatch patterns discovered during benchmark analysis, runs in 7ms:

go test ./internal/annotate/ -run 'TestDatahub_|TestEdge_|TestCorner_' -v

File	Tests	Source
`corner_case_test.go`	13	Manual edge cases + GRCh37 bug fixes
`vep_edge_cases_test.go`	17	Ensembl VEP test patterns
`datahub_mismatch_test.go`	36	Datahub mismatch mining

Mismatch Collection

Collect all mismatches for analysis:

# GRCh38 mismatches
go test ./internal/output/ -run TestMismatchCollection -v -count=1 -timeout 60m
# Output: testdata/datahub_all/GRCh38/mismatches.json

# GRCh37 mismatches
go test ./internal/output/ -run TestMismatchCollectionGRCh37 -v -count=1 -timeout 120m
# Output: testdata/datahub_all/GRCh37/mismatches.json

GRCh38 Results

32-study GDC benchmark from cBioPortal/datahub:

Generated: 2026-03-16 13:50 UTC
Assembly: GRCh38
Studies: 32
GENCODE transcripts: 252930 (loaded from GTF/FASTA in 16.867s)
Workers: 4 (GOMAXPROCS)
System: Intel(R) Core(TM) i5-7267U CPU @ 3.10GHz (4 cores), 15 GB, Ubuntu 24.04.4 LTS, Go go1.24.1

Match Rates

Study	Variants	Conseq Match	Conseq Mismatch	Conseq Rate	HGVSp Match	HGVSp Rate	HGVSc Match	HGVSc Rate
acc_tcga_gdc	8226	8209	0	99.8%	7776	94.5%	8059	98.0%
aml_tcga_gdc	569	568	0	99.8%	537	94.4%	562	98.8%
blca_tcga_gdc	116684	116484	1	99.8%	111298	95.4%	115024	98.6%
brca_tcga_gdc	89012	88850	1	99.8%	85022	95.5%	87810	98.6%
ccrcc_tcga_gdc	25507	25459	3	99.8%	24136	94.6%	25087	98.4%
cesc_tcga_gdc	68893	68783	3	99.8%	65799	95.5%	67934	98.6%
chol_tcga_gdc	3764	3758	0	99.8%	3537	94.0%	3696	98.2%
chrcc_tcga_gdc	2286	2275	1	99.5%	2084	91.2%	2242	98.1%
coad_tcga_gdc	244552	244109	3	99.8%	230213	94.1%	241047	98.6%
difg_tcga_gdc	30306	30259	1	99.8%	28946	95.5%	29918	98.7%
dlbclnos_tcga_gdc	5111	5082	1	99.4%	4818	94.3%	5012	98.1%
esca_tcga_gdc	29760	29708	2	99.8%	28254	94.9%	29352	98.6%
gbm_tcga_gdc	54870	54749	0	99.8%	52157	95.1%	54154	98.7%
hcc_tcga_gdc	45290	45206	1	99.8%	42330	93.5%	44523	98.3%
hgsoc_tcga_gdc	39499	39410	2	99.8%	37206	94.2%	38822	98.3%
hnsc_tcga_gdc	87967	87789	2	99.8%	84024	95.5%	86813	98.7%
luad_tcga_gdc	190868	190445	2	99.8%	182341	95.5%	188286	98.6%
lusc_tcga_gdc	170943	170532	5	99.8%	162883	95.3%	168648	98.7%
mnet_tcga_gdc	1946	1938	0	99.6%	1858	95.5%	1925	98.9%
nsgct_tcga_gdc	2706	2697	0	99.7%	2396	88.5%	2658	98.2%
paad_tcga_gdc	24849	24803	0	99.8%	23783	95.7%	24559	98.8%
plmeso_tcga_gdc	2709	2704	1	99.8%	2554	94.3%	2656	98.0%
prad_tcga_gdc	24694	24651	1	99.8%	23553	95.4%	24373	98.7%
prcc_tcga_gdc	19284	19240	2	99.8%	18094	93.8%	18890	98.0%
skcm_tcga_gdc	353450	352616	3	99.8%	337405	95.5%	349019	98.7%
soft_tissue_tcga_gdc	17405	17369	0	99.8%	16569	95.2%	17152	98.5%
stad_tcga_gdc	183107	182775	7	99.8%	173232	94.6%	180300	98.5%
thpa_tcga_gdc	5834	5825	0	99.8%	5570	95.5%	5746	98.5%
thym_tcga_gdc	2396	2393	0	99.9%	2272	94.8%	2365	98.7%
ucec_tcga_gdc	626518	625364	11	99.8%	597805	95.4%	618791	98.8%
ucs_tcga_gdc	8774	8761	0	99.9%	8389	95.6%	8675	98.9%
um_tcga_gdc	1490	1489	0	99.9%	1424	95.6%	1462	98.1%
Total	2489269	2484300	53	99.8%	2368265	95.1%	2455560	98.6%

Consequence Category Breakdown

Study	delins_normalized	gene_model_change	match	mismatch	no_cds_data	position_shift	transcript_model_change	upstream_reclassified
acc_tcga_gdc	0	0	8150	0	7	2	8	59
aml_tcga_gdc	0	0	566	0	1	0	0	2
blca_tcga_gdc	0	2	115579	1	74	29	94	905
brca_tcga_gdc	0	0	88306	1	78	26	57	544
ccrcc_tcga_gdc	2	0	25301	3	20	9	14	158
cesc_tcga_gdc	0	3	68250	3	32	25	47	533
chol_tcga_gdc	0	0	3727	0	4	1	1	31
chrcc_tcga_gdc	0	0	2257	1	3	3	4	18
coad_tcga_gdc	5	3	242427	3	193	63	176	1682
difg_tcga_gdc	0	0	30064	1	21	11	14	195
dlbclnos_tcga_gdc	0	1	5047	1	6	19	2	35
esca_tcga_gdc	0	0	29507	2	20	13	17	201
gbm_tcga_gdc	0	0	54378	0	59	25	37	371
hcc_tcga_gdc	0	0	44874	1	33	11	39	332
hgsoc_tcga_gdc	0	1	39131	2	36	23	27	279
hnsc_tcga_gdc	0	1	87174	2	86	38	51	615
luad_tcga_gdc	0	2	189094	2	219	75	125	1351
lusc_tcga_gdc	0	9	169258	5	198	59	140	1274
mnet_tcga_gdc	0	0	1930	0	6	1	1	8
nsgct_tcga_gdc	0	0	2673	0	6	0	3	24
paad_tcga_gdc	0	0	24633	0	23	6	17	170
plmeso_tcga_gdc	0	0	2678	1	2	0	2	26
prad_tcga_gdc	0	0	24490	1	17	14	11	161
prcc_tcga_gdc	0	0	19086	2	9	5	28	154
skcm_tcga_gdc	0	5	350048	3	400	195	231	2568
soft_tissue_tcga_gdc	0	0	17249	0	14	8	14	120
stad_tcga_gdc	4	2	181533	7	130	67	122	1242
thpa_tcga_gdc	0	0	5776	0	5	1	3	49
thym_tcga_gdc	0	0	2379	0	1	1	1	14
ucec_tcga_gdc	6	7	621274	11	498	220	412	4090
ucs_tcga_gdc	0	1	8710	0	5	3	4	51
um_tcga_gdc	0	0	1477	0	0	0	1	12
Total	17	37	2467026	53	2206	953	1703	17274

HGVSc Category Breakdown

Study	both_empty	delins_normalized	dup_vs_ins	maf_empty	match	position_shift	transcript_model_change	vep_empty
acc_tcga_gdc	0	9	3	59	8059	85	11	0
aml_tcga_gdc	0	3	1	2	562	1	0	0
blca_tcga_gdc	10	82	25	898	115024	342	301	2
brca_tcga_gdc	8	106	34	538	87810	363	153	0
ccrcc_tcga_gdc	1	77	20	157	25087	108	57	0
cesc_tcga_gdc	11	21	18	525	67934	215	166	3
chol_tcga_gdc	0	7	3	31	3696	19	8	0
chrcc_tcga_gdc	0	2	3	18	2242	17	4	0
coad_tcga_gdc	25	90	175	1653	241047	1118	440	4
difg_tcga_gdc	2	13	8	193	29918	121	51	0
dlbclnos_tcga_gdc	1	9	2	35	5012	41	10	1
esca_tcga_gdc	1	20	12	202	29352	105	68	0
gbm_tcga_gdc	3	9	22	369	54154	213	100	0
hcc_tcga_gdc	4	68	56	329	44523	230	80	0
hgsoc_tcga_gdc	3	70	32	276	38822	202	93	1
hnsc_tcga_gdc	12	54	33	603	86813	264	187	1
luad_tcga_gdc	25	207	45	1329	188286	516	457	3
lusc_tcga_gdc	14	113	36	1260	168648	451	410	11
mnet_tcga_gdc	0	1	1	8	1925	10	1	0
nsgct_tcga_gdc	0	2	4	26	2658	10	6	0
paad_tcga_gdc	4	5	5	166	24559	71	39	0
plmeso_tcga_gdc	0	8	2	26	2656	11	6	0
prad_tcga_gdc	3	19	7	158	24373	93	41	0
prcc_tcga_gdc	2	80	15	154	18890	93	50	0
skcm_tcga_gdc	47	152	26	2525	349019	1032	644	5
soft_tissue_tcga_gdc	2	15	1	118	17152	71	46	0
stad_tcga_gdc	13	78	103	1237	180300	891	483	2
thpa_tcga_gdc	0	4	4	49	5746	13	18	0
thym_tcga_gdc	0	2	0	14	2365	7	8	0
ucec_tcga_gdc	60	96	152	4036	618791	2052	1323	8
ucs_tcga_gdc	0	5	0	51	8675	21	21	1
um_tcga_gdc	0	2	0	12	1462	11	3	0
Total	251	1429	848	17057	2455560	8797	5285	42

HGVSp Category Breakdown

Study	both_empty	delins_normalized	dup_vs_ins	fuzzy_fs	maf_empty	maf_nonstandard	match	no_cds_data	position_shift	splice_no_protein	splice_vs_predicted	splice_vs_syn	transcript_model_change	vep_empty
acc_tcga_gdc	29	0	0	61	54	150	7776	7	78	10	0	48	4	9
aml_tcga_gdc	0	0	0	15	2	6	537	2	1	0	0	6	0	0
blca_tcga_gdc	475	0	1	340	749	2621	111298	74	306	57	27	617	64	55
brca_tcga_gdc	329	6	4	528	454	1561	85022	79	325	94	45	476	34	55
ccrcc_tcga_gdc	98	3	1	307	139	488	24136	21	101	33	14	144	8	14
cesc_tcga_gdc	272	2	0	206	450	1438	65799	32	194	16	9	397	27	51
chol_tcga_gdc	24	0	0	46	23	84	3537	4	12	8	1	21	2	2
chrcc_tcga_gdc	57	0	0	20	7	77	2084	3	12	0	0	18	1	7
coad_tcga_gdc	2281	1	2	2554	1342	5432	230213	196	691	43	37	1371	100	289
difg_tcga_gdc	118	1	0	194	162	535	28946	22	103	14	11	174	9	17
dlbclnos_tcga_gdc	40	0	0	28	26	107	4818	6	42	4	1	31	1	7
esca_tcga_gdc	111	2	1	235	168	678	28254	21	85	12	9	151	12	21
gbm_tcga_gdc	192	0	2	446	310	1114	52157	59	181	14	12	326	25	32
hcc_tcga_gdc	338	0	0	726	273	1020	42330	33	167	45	19	275	21	43
hgsoc_tcga_gdc	161	3	0	521	241	815	37206	36	165	107	32	175	18	19
hnsc_tcga_gdc	301	1	1	427	514	1769	84024	86	249	33	14	467	32	49
luad_tcga_gdc	711	0	0	694	1090	4107	182341	223	434	55	22	1005	74	112
lusc_tcga_gdc	648	1	2	594	1053	3927	162883	204	375	48	20	1004	83	101
mnet_tcga_gdc	7	0	0	8	7	35	1858	6	10	1	1	11	1	1
nsgct_tcga_gdc	37	0	0	10	17	209	2396	6	8	1	1	10	0	11
paad_tcga_gdc	93	0	0	77	149	488	23783	24	58	11	5	140	10	11
plmeso_tcga_gdc	16	0	1	17	20	62	2554	2	9	5	2	17	1	3
prad_tcga_gdc	100	1	0	152	139	472	23553	17	85	6	7	136	7	19
prcc_tcga_gdc	138	2	1	252	121	378	18094	10	97	20	11	123	18	19
skcm_tcga_gdc	1372	4	0	235	2051	7945	337405	401	924	53	17	2674	110	259
soft_tissue_tcga_gdc	80	0	0	55	98	367	16569	14	61	15	4	116	9	17
stad_tcga_gdc	774	1	5	2515	1027	3544	173232	130	561	65	47	952	73	181
thpa_tcga_gdc	28	0	0	29	36	113	5570	5	13	3	2	28	1	6
thym_tcga_gdc	7	0	0	25	12	54	2272	1	5	2	1	15	0	2
ucec_tcga_gdc	2556	6	1	3573	3362	12469	597805	505	1625	81	54	3810	221	450
ucs_tcga_gdc	30	0	0	54	44	162	8389	5	25	4	0	53	2	6
um_tcga_gdc	3	0	0	10	9	24	1424	0	10	0	1	8	1	0
Total	11426	34	22	14954	14149	52251	2368265	2234	7012	860	426	14799	969	1868

Cancer Gene Mismatches

1209 cancer genes have 100% match. Mismatches in 5 gene(s):

Gene	Variants	Conseq Mismatches
VHL	224	2
BIRC5	44	1
NEGR1	143	1
PIK3CA	1589	1
TCF12	183	1

Performance

Study	Variants	Sequential	Seq v/s	Parallel	Par v/s	Speedup
acc_tcga_gdc	8226	256ms	32110	121ms	68144	2.12x
aml_tcga_gdc	569	27ms	20877	9ms	61651	2.95x
blca_tcga_gdc	116684	4.172s	27968	1.841s	63383	2.27x
brca_tcga_gdc	89012	3.149s	28264	1.399s	63636	2.25x
ccrcc_tcga_gdc	25507	909ms	28061	406ms	62838	2.24x
cesc_tcga_gdc	68893	2.328s	29599	1.096s	62855	2.12x
chol_tcga_gdc	3764	118ms	32013	54ms	69071	2.16x
chrcc_tcga_gdc	2286	72ms	31685	40ms	57225	1.81x
coad_tcga_gdc	244552	7.846s	31169	3.689s	66297	2.13x
difg_tcga_gdc	30306	1.009s	30038	428ms	70853	2.36x
dlbclnos_tcga_gdc	5111	160ms	31953	65ms	78055	2.44x
esca_tcga_gdc	29760	1.074s	27698	428ms	69552	2.51x
gbm_tcga_gdc	54870	1.76s	31171	838ms	65515	2.10x
hcc_tcga_gdc	45290	1.491s	30370	671ms	67537	2.22x
hgsoc_tcga_gdc	39499	1.46s	27049	686ms	57547	2.13x
hnsc_tcga_gdc	87967	2.854s	30819	1.358s	64756	2.10x
luad_tcga_gdc	190868	6.065s	31469	2.946s	64795	2.06x
lusc_tcga_gdc	170943	5.355s	31923	2.674s	63938	2.00x
mnet_tcga_gdc	1946	68ms	28652	23ms	82819	2.89x
nsgct_tcga_gdc	2706	88ms	30703	48ms	56934	1.85x
paad_tcga_gdc	24849	780ms	31851	369ms	67399	2.12x
plmeso_tcga_gdc	2709	87ms	31192	34ms	80540	2.58x
prad_tcga_gdc	24694	829ms	29789	339ms	72821	2.44x
prcc_tcga_gdc	19284	658ms	29307	330ms	58399	1.99x
skcm_tcga_gdc	353450	10.914s	32384	5.4s	65456	2.02x
soft_tissue_tcga_gdc	17405	562ms	30966	276ms	63023	2.04x
stad_tcga_gdc	183107	6.041s	30313	2.769s	66121	2.18x
thpa_tcga_gdc	5834	192ms	30345	82ms	71108	2.34x
thym_tcga_gdc	2396	84ms	28370	30ms	79455	2.80x
ucec_tcga_gdc	626518	19.561s	32030	9.34s	67082	2.09x
ucs_tcga_gdc	8774	288ms	30500	144ms	61006	2.00x
um_tcga_gdc	1490	64ms	23317	22ms	68082	2.92x
Total	2489269	1m20.323s	30991	37.954s	65587	2.12x

GRCh37 Results

431-study benchmark from cBioPortal/datahub:

Generated: 2026-03-16 13:48 UTC
Assembly: GRCh37
Studies: 431
GENCODE transcripts: 196520 (loaded from GTF/FASTA in 20.875s)
Workers: 4 (GOMAXPROCS)
System: Intel(R) Core(TM) i5-7267U CPU @ 3.10GHz (4 cores), 16239572 kB, Ubuntu 24.04.4 LTS, Go go1.24.1

Match Rates

Study	Variants	Conseq Match	Conseq Mismatch	Conseq Rate	HGVSp Match	HGVSp Mismatch	HGVSp Rate	HGVSc Match	HGVSc Mismatch	HGVSc Rate
acbc_mskcc_2015	254	254	0	100.0%	240	1	94.5%	244	10	96.1%
acc_2019	10867	10861	4	99.9%	9860	3	90.7%	10098	476	92.9%
acc_tcga	20166	20140	16	99.9%	19399	80	96.2%	18801	1234	93.2%
acc_tcga_pan_can_atlas_2018	11660	11648	1	99.9%	9672	1	83.0%	11425	0	98.0%
acyc_fmi_2014	29	29	0	100.0%	25	0	86.2%	22	6	75.9%
acyc_jhu_2016	396	396	0	100.0%	350	0	88.4%	349	40	88.1%
acyc_mda_2015	815	813	1	99.8%	744	0	91.3%	718	80	88.1%
acyc_mgh_2016	1454	1443	2	99.2%	1419	0	97.6%	1441	0	99.1%
acyc_mskcc_2013	708	708	0	100.0%	688	1	97.2%	678	30	95.8%
acyc_sanger_2013	310	309	1	99.7%	293	0	94.5%	265	43	85.5%
all_phase2_target_2018_pub	764	764	0	100.0%	746	1	97.6%	746	14	97.6%
all_stjude_2013	735	735	0	100.0%	475	0	64.6%	715	0	97.3%
all_stjude_2015	80	80	0	100.0%	80	0	100.0%	80	0	100.0%
all_stjude_2016	1271	1270	1	99.9%	783	0	61.6%	1223	2	96.2%
aml_ohsu_2018	9910	9900	5	99.9%	9523	5	96.1%	9489	381	95.8%
aml_ohsu_2022	11967	11957	2	99.9%	11299	2	94.4%	11869	2	99.2%
aml_stjude_2024	1698	1697	1	99.9%	1490	0	87.8%	1576	0	92.8%
aml_target_2018_pub	557	557	0	100.0%	548	0	98.4%	551	5	98.9%
ampca_bcm_2016	28748	28731	15	99.9%	27501	35	95.7%	24423	4193	85.0%
angs_painter_2025	18814	18776	1	99.8%	16055	0	85.3%	18519	0	98.4%
angs_project_painter_2018	24058	24034	22	99.9%	23563	0	97.9%	23996	0	99.7%
appendiceal_msk_2022	1084	1082	1	99.8%	1044	0	96.3%	1050	18	96.9%
asclc_msk_2024	240	240	0	100.0%	231	0	96.2%	237	2	98.8%
bcc_unige_2016	234453	234054	176	99.8%	224199	199	95.6%	221914	3794	94.7%
bfn_duke_nus_2015	417	417	0	100.0%	399	0	95.7%	406	11	97.4%
biliary_tract_summit_2022	192	192	0	100.0%	183	0	95.3%	188	1	97.9%
bladder_columbia_msk_2018	3629	3629	0	100.0%	3342	0	92.1%	3502	0	96.5%
bladder_msk_2023	7000	6996	2	99.9%	6292	0	89.9%	6522	1	93.2%
blca_bcan_hcrn_2022	5607	5605	0	100.0%	5211	0	92.9%	5514	0	98.3%
blca_bgi	11239	11234	5	100.0%	10972	6	97.6%	11122	83	99.0%
blca_cornell_2016	19392	19363	15	99.9%	18015	0	92.9%	19256	2	99.3%
blca_dfarber_mskcc_2014	21365	21321	17	99.8%	15808	7	74.0%	19281	217	90.2%
blca_msk_2024	3819	3811	3	99.8%	3510	0	91.9%	3567	2	93.4%
blca_msk_tcga_2020	133882	133733	93	99.9%	115799	3	86.5%	131125	465	97.9%
blca_mskcc_solit_2012	103	103	0	100.0%	99	0	96.1%	99	4	96.1%
blca_mskcc_solit_2014	1177	1177	0	100.0%	1131	1	96.1%	1128	31	95.8%
blca_nmibc_2017	1609	1608	1	99.9%	1467	3	91.2%	1493	21	92.8%
blca_pdx_msk_2025	2550	2548	1	99.9%	2370	0	92.9%	2408	5	94.4%
blca_plasmacytoid_mskcc_2016	463	463	0	100.0%	428	0	92.4%	437	8	94.4%
blca_tcga	39312	39267	29	99.9%	38550	43	98.1%	37929	1304	96.5%
blca_tcga_pan_can_atlas_2018	154702	154554	24	99.9%	134903	2	87.2%	153018	0	98.9%
blca_tcga_pub_2017	131660	131579	76	99.9%	128451	14	97.6%	130457	971	99.1%
blca_tcga_pub	39326	39283	27	99.9%	38599	36	98.2%	38033	1220	96.7%
bm_nsclc_mskcc_2023	4312	4311	0	100.0%	4212	1	97.7%	4133	36	95.8%
bowel_colitis_msk_2022	1896	1896	0	100.0%	1822	1	96.1%	1859	3	98.0%
braf_msk_impact_2024	794	794	0	100.0%	744	0	93.7%	767	0	96.6%
brain_cptac_2020	9951	9914	3	99.6%	8215	0	82.6%	9443	0	94.9%
brca_bccrc	2397	2394	3	99.9%	2362	0	98.5%	2381	9	99.3%
brca_bccrc_xenograft_2014	18689	18684	2	100.0%	9970	0	53.3%	16402	0	87.8%
brca_broad	4985	4983	2	100.0%	4794	5	96.2%	4879	67	97.9%
brca_cptac_2020	29018	29008	0	100.0%	27907	0	96.2%	28843	0	99.4%
brca_dfci_2020	13613	13604	1	99.9%	11625	0	85.4%	13452	0	98.8%
brca_dldccc_2022	24511	24507	0	100.0%	23232	0	94.8%	24118	0	98.4%
brca_fuscc_2020	625	625	0	100.0%	614	0	98.2%	625	0	100.0%
brca_hta9_htan_2022	2103	2102	0	100.0%	983	0	46.7%	1936	2	92.1%
brca_igr_2015	22949	22913	21	99.8%	20478	2	89.2%	22714	24	99.0%
brca_jup_msk_2020	104	104	0	100.0%	104	0	100.0%	104	0	100.0%
brca_mapk_hp_msk_2021	637	637	0	100.0%	602	1	94.5%	602	22	94.5%
brca_mbcproject_2022	55971	55890	3	99.9%	43149	0	77.1%	54796	0	97.9%
brca_mbcproject_wagle_2017	24027	24011	16	99.9%	23339	1	97.1%	23870	45	99.3%
brca_metabric	17272	17272	0	100.0%	16951	1	98.1%	16959	271	98.2%
brca_mskcc_2019	658	658	0	100.0%	635	4	96.5%	617	38	93.8%
brca_pareja_msk_2020	3694	3692	0	99.9%	3621	0	98.0%	3668	0	99.3%
brca_sanger	7239	7231	7	99.9%	6828	0	94.3%	7183	27	99.2%
brca_smc_2018	6885	6876	5	99.9%	6770	0	98.3%	6872	0	99.8%
brca_tcga	90490	90353	53	99.8%	82398	80	91.1%	83686	6030	92.5%
brca_tcga_pan_can_atlas_2018	130495	130336	14	99.9%	108562	0	83.2%	127987	0	98.1%
brca_tcga_pub2015	69968	69857	49	99.8%	68408	110	97.8%	64894	4776	92.7%
brca_tcga_pub	33990	33974	11	100.0%	30179	30	88.8%	32159	1249	94.6%
breast_alpelisib_2020	833	833	0	100.0%	799	3	95.9%	798	26	95.8%
breast_ink4_msk_2021	8182	8179	1	100.0%	7708	2	94.2%	7988	5	97.6%
breast_msk_2018	9314	9307	6	99.9%	8929	11	95.9%	8662	447	93.0%
ccle_broad_2019	1212258	1211236	898	99.9%	1161879	98	95.8%	1175369	15996	97.0%
ccle_genentech_2014	265375	265284	60	100.0%	260533	0	98.2%	263802	0	99.4%
ccrcc_dfci_2019	4146	4129	3	99.6%	3558	0	85.8%	3945	60	95.2%
ccrcc_irc_2014	3444	3443	1	100.0%	3373	0	97.9%	3388	28	98.4%
ccrcc_sjuh_2023	1476	1472	4	99.7%	1075	0	72.8%	1383	0	93.7%
ccrcc_utokyo_2013	76105	76096	3	100.0%	5388	0	7.1%	39144	21	51.4%
cellline_ccle_broad	91417	91362	44	99.9%	62730	0	68.6%	72353	48	79.1%
cellline_nci60	74150	73767	18	99.5%	38945	0	52.5%	59428	30	80.1%
cervix_msk_2023	1071	1071	0	100.0%	1048	0	97.9%	1055	0	98.5%
cesc_tcga	46547	46410	6	99.7%	38755	26	83.3%	44798	676	96.2%
cesc_tcga_pan_can_atlas_2018	100786	100687	9	99.9%	74203	0	73.6%	97985	0	97.2%
cfdna_msk_2019	3889	3889	0	100.0%	3766	8	96.8%	3815	39	98.1%
chl_sccc_2023	6812	6799	8	99.8%	6507	0	95.5%	6702	0	98.4%
chol_icgc_2017	5107	5107	0	100.0%	4899	0	95.9%	5061	0	99.1%
chol_jhu_2013	1980	1977	2	99.8%	1860	0	93.9%	1953	9	98.6%
chol_msk_2018	767	767	0	100.0%	727	1	94.8%	681	63	88.8%
chol_nccs_2013	243	243	0	100.0%	238	0	97.9%	241	2	99.2%
chol_nus_2012	205	205	0	100.0%	188	0	91.7%	202	3	98.5%
chol_tcga	6755	6701	5	99.2%	5739	6	85.0%	6272	244	92.8%
chol_tcga_pan_can_atlas_2018	4500	4493	0	99.8%	3064	0	68.1%	4333	0	96.3%
cll_broad_2015	12614	12604	10	99.9%	0	11	0.0%	12517	78	99.2%
cll_broad_2022	40401	40378	7	99.9%	39587	0	98.0%	40179	0	99.5%
cll_iuopa_2015	13631	13627	3	100.0%	9359	0	68.7%	13115	52	96.2%
cllsll_icgc_2011	1110	1110	0	100.0%	1086	0	97.8%	1101	0	99.2%
coad_caseccc_2015	2696	2694	1	99.9%	2645	0	98.1%	2688	4	99.7%
coad_cptac_2019	73833	73742	54	99.9%	70220	11	95.1%	69673	3666	94.4%
coad_silu_2022	140127	140014	15	99.9%	135106	0	96.4%	138705	0	99.0%
coadread_cass_2020	50415	50275	29	99.7%	36642	8	72.7%	42605	683	84.5%
coadread_dfci_2016	331423	330696	244	99.8%	278635	120	84.1%	288347	35514	87.0%
coadread_genentech	36271	36241	17	99.9%	35798	0	98.7%	36160	5	99.7%
coadread_mskcc	781	781	0	100.0%	725	0	92.8%	742	5	95.0%
coadread_mskresistance_2022	9342	9291	11	99.5%	8363	0	89.5%	6013	289	64.4%
coadread_tcga	84595	84518	34	99.9%	81837	39	96.7%	81697	2648	96.6%
coadread_tcga_pan_can_atlas_2018	332610	332274	67	99.9%	277247	0	83.4%	325236	0	97.8%
coadread_tcga_pub	92132	92060	14	99.9%	88676	0	96.2%	91496	24	99.3%
crc_apc_impact_2020	4593	4592	0	100.0%	4393	1	95.6%	4519	2	98.4%
crc_dd_2022	1823	1823	0	100.0%	1775	0	97.4%	1812	0	99.4%
crc_eo_2020	20198	20193	1	100.0%	19410	0	96.1%	19980	1	98.9%
crc_hta11_htan_2021	53025	52933	14	99.8%	47864	3	90.3%	51340	67	96.8%
crc_hta8_htan_2024	187	187	0	100.0%	180	0	96.3%	184	1	98.4%
crc_msk_2017	18145	18123	4	99.9%	17826	1	98.2%	17967	1	99.0%
crc_nigerian_2020	1571	1570	0	99.9%	1503	0	95.7%	1559	0	99.2%
crc_orion_2024	1062	1062	0	100.0%	933	0	87.9%	1034	0	97.4%
crc_sysucc_2022	356876	356113	80	99.8%	346751	1	97.2%	353984	2	99.2%
cscc_dfarber_2015	2757	2754	3	99.9%	2640	4	95.8%	2725	21	98.8%
cscc_hgsc_bcm_2014	108034	107826	66	99.8%	100415	3	92.9%	100911	283	93.4%
cscc_ucsf_2021	146195	146195	0	100.0%	55962	30538	38.3%	0	0	0.0%
csf_msk_2024	3944	3942	1	99.9%	3777	0	95.8%	3782	3	95.9%
ctcl_columbia_2015	2473	2473	0	100.0%	2449	0	99.0%	2470	0	99.9%
desm_broad_2015	28331	28299	22	99.9%	26849	8	94.8%	28105	77	99.2%
difg_glass_2019	2402922	2402519	9	100.0%	138597	2	5.8%	1303100	917	54.2%
difg_glass	1528395	1528107	5	100.0%	103289	1	6.8%	827457	784	54.1%
difg_msk_2023	1194	1194	0	100.0%	1097	0	91.9%	1113	1	93.2%
dlbc_broad_2012	11655	11645	4	99.9%	11323	0	97.2%	11607	4	99.6%
dlbc_tcga	16918	16847	11	99.6%	16452	28	97.2%	16316	484	96.4%
dlbc_tcga_pan_can_atlas_2018	7784	7738	5	99.4%	6336	0	81.4%	7566	0	97.2%
dlbcl_dfci_2018	20328	20310	18	99.9%	20047	0	98.6%	20212	99	99.4%
dlbcl_duke_2017	7105	7105	0	100.0%	6779	0	95.4%	7061	12	99.4%
egc_msk_2017	2245	2245	0	100.0%	2198	3	97.9%	1857	368	82.7%
egc_msk_2023	7480	7478	0	100.0%	7192	0	96.1%	7351	3	98.3%
egc_msk_tp53_ccr_2022	2126	2125	1	100.0%	2049	1	96.4%	2009	76	94.5%
egc_mskcc_2020	3415	3412	3	99.9%	3297	1	96.5%	3060	306	89.6%
egc_tmucih_2015	13866	13852	7	99.9%	13486	3	97.3%	13313	496	96.0%
egc_trap_ccr_msk_2023	14703	14691	2	99.9%	11492	0	78.2%	14136	9	96.1%
egc_trap_msk_2020	6532	6526	2	99.9%	5300	0	81.1%	6345	5	97.1%
es_dfarber_broad_2014	15232	15225	6	100.0%	14837	3	97.4%	14941	85	98.1%
es_dsrct_msk_2023	334	334	0	100.0%	302	0	90.4%	314	1	94.0%
es_iocurie_2014	2043	2040	2	99.9%	1154	0	56.5%	1955	0	95.7%
esca_broad	31023	30996	10	99.9%	25133	0	81.0%	29441	10	94.9%
esca_tcga	58602	58386	23	99.6%	49368	52	84.2%	52464	4235	89.5%
esca_tcga_pan_can_atlas_2018	47781	47724	6	99.9%	34077	0	71.3%	45749	0	95.7%
escc_icgc	7279	7271	5	99.9%	7120	0	97.8%	7243	14	99.5%
escc_ucla_2014	3032	3031	1	100.0%	2942	0	97.0%	2973	50	98.1%
gbc_msk_2018	819	819	0	100.0%	774	2	94.5%	746	61	91.1%
gbc_mskcc_2022	1653	1650	1	99.8%	1560	1	94.4%	1563	41	94.6%
gbc_shanghai_2014	5265	5260	4	99.9%	1947	0	37.0%	4841	4	91.9%
gbm_columbia_2019	863	858	1	99.4%	778	0	90.2%	848	2	98.3%
gbm_cptac_2021	6667	6667	0	100.0%	4635	1606	69.5%	0	0	0.0%
gbm_mayo_pdx_sarkaria_2019	193393	192958	98	99.8%	48687	85	25.2%	143033	950	74.0%
gbm_tcga	22073	22043	12	99.9%	21132	27	95.7%	20898	1066	94.7%
gbm_tcga_pan_can_atlas_2018	68802	68719	14	99.9%	59985	0	87.2%	68084	0	99.0%
gbm_tcga_pub2013	16325	16310	6	99.9%	15843	15	97.0%	15698	563	96.2%
gbm_tcga_pub	452	452	0	100.0%	440	0	97.3%	416	36	92.0%
gct_msk_2016	334	334	0	100.0%	325	1	97.3%	316	12	94.6%
gct_msk_2020	291	281	0	96.6%	262	0	90.0%	251	0	86.3%
gist_msk_2022	1079	1078	1	99.9%	975	30	90.4%	922	79	85.4%
gist_msk_2023	992	992	0	100.0%	899	0	90.6%	921	0	92.8%
glioma_msk_2018	2385	2385	0	100.0%	0	0	0.0%	2290	37	96.0%
glioma_mskcc_2019	8905	8904	1	100.0%	8133	5	91.3%	8035	217	90.2%
hcc_clca_2024	283223	272788	10396	96.3%	59850	0	21.1%	215348	41	76.0%
hcc_inserm_fr_2015	28170	28138	22	99.9%	27229	0	96.7%	27844	55	98.8%
hcc_jcopo_msk_2023	425	423	2	99.5%	359	0	84.5%	357	0	84.0%
hcc_meric_2021	24488	24458	8	99.9%	24141	0	98.6%	24409	0	99.7%
hcc_msk_2024	6800	6796	1	99.9%	6275	0	92.3%	6411	1	94.3%
hcc_msk_venturaa_2018	67	67	0	100.0%	59	0	88.1%	60	0	89.6%
hcc_mskimpact_2018	605	604	1	99.8%	521	1	86.1%	506	10	83.6%
hccihch_pku_2019	17544	17535	2	99.9%	16928	0	96.5%	17430	0	99.4%
heme_msk_impact_2022	12893	12885	4	99.9%	12214	0	94.7%	12414	6	96.3%
hgsoc_msk_2021	183	183	0	100.0%	175	0	95.6%	175	0	95.6%
histiocytosis_cobi_msk_2019	419	391	1	93.3%	324	2	77.3%	269	8	64.2%
hnc_mskcc_2016	1390	1389	0	99.9%	1328	1	95.5%	1222	81	87.9%
hnsc_broad	9603	9590	9	99.9%	9333	4	97.2%	9481	44	98.7%
hnsc_jhu	601	601	0	100.0%	594	0	98.8%	601	0	100.0%
hnsc_mdanderson_2013	3471	3464	3	99.8%	3344	18	96.3%	3365	88	96.9%
hnsc_tcga	120402	120220	110	99.8%	112590	123	93.5%	113253	5435	94.1%
hnsc_tcga_pan_can_atlas_2018	124375	124219	14	99.9%	108719	0	87.4%	122933	0	98.8%
hnsc_tcga_pub	52669	52620	5	99.9%	50576	0	96.0%	51780	7	98.3%
ihch_ismms_2015	217	217	0	100.0%	198	0	91.2%	210	0	96.8%
ihch_msk_2021	1628	1627	1	99.9%	1531	0	94.0%	1581	0	97.1%
ihch_mskcc_2020	805	804	1	99.9%	763	0	94.8%	788	0	97.9%
ihch_smmu_2014	9713	9639	2	99.2%	8922	0	91.9%	9544	0	98.3%
ilc_msk_2023	91	91	0	100.0%	86	0	94.5%	85	1	93.4%
kich_tcga	7559	7514	9	99.4%	7068	14	93.5%	6887	577	91.1%
kich_tcga_pan_can_atlas_2018	3268	3264	0	99.9%	2756	0	84.3%	3225	0	98.7%
kich_tcga_pub	1787	1786	1	99.9%	1698	2	95.0%	1663	104	93.1%
kirc_bgi	532	532	0	100.0%	527	0	99.1%	518	13	97.4%
kirc_tcga	47012	46927	40	99.8%	39694	106	84.4%	34282	11556	72.9%
kirc_tcga_pan_can_atlas_2018	31073	31033	9	99.9%	26239	0	84.4%	30473	0	98.1%
kirc_tcga_pub	37725	37667	40	99.8%	27827	90	73.8%	32930	2795	87.3%
kirp_tcga	18878	18737	17	99.3%	18121	55	96.0%	16257	2434	86.1%
kirp_tcga_pan_can_atlas_2018	34374	34335	4	99.9%	28233	0	82.1%	33537	0	97.6%
laml_tcga	2584	2566	0	99.3%	2217	1	85.8%	2311	183	89.4%
laml_tcga_pan_can_atlas_2018	10847	10831	5	99.9%	9314	1	85.9%	10469	238	96.5%
laml_tcga_pub	2532	2526	0	99.8%	2210	0	87.3%	2309	174	91.2%
lcll_broad_2013	3125	3120	1	99.8%	2996	3	95.9%	3057	49	97.8%
lgg_tcga	9885	9880	1	99.9%	9673	8	97.9%	9223	647	93.3%
lgg_tcga_pan_can_atlas_2018	39299	39259	4	99.9%	35044	0	89.2%	38872	0	98.9%
lgg_ucsf_2014	15155	15126	9	99.8%	14872	0	98.1%	15025	49	99.1%
lgggbm_tcga_pub	30729	30717	12	100.0%	30450	22	99.1%	29597	1093	96.3%
lgsoc_mapk_msk_2022	202	202	0	100.0%	195	0	96.5%	197	0	97.5%
liad_inserm_fr_2014	1177	1174	1	99.7%	1121	0	95.2%	1161	0	98.6%
lihc_amc_prv	27580	27561	15	99.9%	26866	14	97.4%	27454	48	99.5%
lihc_riken	53	53	0	100.0%	53	0	100.0%	52	1	98.1%
lihc_tcga	53777	53545	28	99.6%	52199	68	97.1%	47631	5777	88.6%
lihc_tcga_pan_can_atlas_2018	60145	60075	12	99.9%	48736	0	81.0%	58999	0	98.1%
luad_broad	65767	65671	27	99.9%	63538	0	96.6%	64490	24	98.1%
luad_cas_2020	17917	17876	2	99.8%	14738	0	82.3%	17153	0	95.7%
luad_cptac_2020	31963	31199	250	97.6%	23798	203	74.5%	29051	1726	90.9%
luad_msk_npjpo_2021	3579	3574	2	99.9%	3455	0	96.5%	3431	8	95.9%
luad_mskcc_2015	9049	9044	2	99.9%	8826	0	97.5%	9032	0	99.8%
luad_mskcc_2020	4814	4809	3	99.9%	4650	17	96.6%	4513	125	93.7%
luad_mskcc_2023_met_organotropism	113828	113646	9	99.8%	93627	1	82.3%	108919	50	95.7%
luad_mskimpact_2021	1030	1030	0	100.0%	1000	0	97.1%	984	0	95.5%
luad_oncosg_2020	73678	73559	55	99.8%	40518	0	55.0%	68222	0	92.6%
luad_tcga	72541	72427	35	99.8%	70063	31	96.6%	69016	2186	95.1%
luad_tcga_pan_can_atlas_2018	243229	242888	27	99.9%	215038	0	88.4%	240333	0	98.8%
luad_tcga_pub	72566	72452	35	99.8%	70087	31	96.6%	69032	2194	95.1%
luad_tsp	1017	1015	0	99.8%	982	1	96.6%	985	15	96.9%
lung_msk_2017	7181	7173	2	99.9%	6985	33	97.3%	6693	277	93.2%
lung_msk_mind_2020	2951	2947	0	99.9%	2875	5	97.4%	2812	38	95.3%
lung_msk_pdx	3914	3912	0	99.9%	3806	0	97.2%	3830	0	97.9%
lung_nci_2022	8786	8780	0	99.9%	8300	1	94.5%	8661	1	98.6%
lung_pdx_msk_2021	798	798	0	100.0%	769	0	96.4%	784	0	98.2%
lung_smc_2016	4074	4070	2	99.9%	3960	0	97.2%	4069	0	99.9%
lusc_cptac_2021	35442	35349	44	99.7%	34164	62	96.4%	34506	88	97.4%
lusc_tcga	65305	65214	52	99.9%	63988	10	98.0%	63883	1206	97.8%
lusc_tcga_pan_can_atlas_2018	199105	198836	32	99.9%	174486	0	87.6%	196728	0	98.8%
lusc_tcga_pub	73018	72896	62	99.8%	72057	10	98.7%	70777	1163	96.9%
lymphoma_cellline_msk_2020	1119	1119	0	100.0%	1098	6	98.1%	1080	32	96.5%
makeanimpact_ccr_2023	254	254	0	100.0%	247	0	97.2%	243	2	95.7%
mbc_msk_2021	510	509	0	99.8%	484	0	94.9%	476	0	93.3%
mbl_broad_2012	1808	1801	4	99.6%	1669	2	92.3%	1761	33	97.4%
mbl_dkfz_2017	2200	2200	0	100.0%	2033	0	92.4%	2111	0	96.0%
mbl_icgc	1059	1059	0	100.0%	1043	0	98.5%	1056	0	99.7%
mbl_pcgp	558	558	0	100.0%	514	0	92.1%	555	1	99.5%
mbl_sickkids_2016	4779	4773	6	99.9%	4543	1	95.1%	4577	184	95.8%
mbn_mdacc_2013	45470	45396	30	99.8%	14965	3	32.9%	41235	244	90.7%
mbn_msk_2024	5711	5702	5	99.8%	5484	0	96.0%	5485	2	96.0%
mcl_idibips_2013	653	651	0	99.7%	611	0	93.6%	643	1	98.5%
mds_iwg_2022	15685	15684	0	100.0%	14114	7	90.0%	15464	0	98.6%
mds_mskcc_2020	46861	46719	93	99.7%	43300	2	92.4%	46528	4	99.3%
mds_tokyo_2011	261	261	0	100.0%	256	0	98.1%	252	7	96.6%
mel_dfci_2019	134039	133893	88	99.9%	129832	0	96.9%	130179	25	97.1%
mel_mskimpact_2020	19478	19451	6	99.9%	18657	6	95.8%	17540	258	90.1%
mel_tsam_liang_2017	33022	32983	17	99.9%	10985	14	33.3%	28966	170	87.7%
mel_ucla_2016	26264	26217	17	99.8%	25233	0	96.1%	26070	0	99.3%
meso_tcga	6171	6081	3	98.5%	4432	3	71.8%	5260	67	85.2%
meso_tcga_pan_can_atlas_2018	3980	3974	1	99.8%	3276	0	82.3%	3887	0	97.7%
metastatic_solid_tumors_mich_2017	87070	86891	73	99.8%	81800	63	93.9%	80252	2423	92.2%
mixed_allen_2018	167307	167216	67	99.9%	160021	0	95.6%	165577	0	99.0%
mixed_cfdna_msk_2020	1803	1801	0	99.9%	1680	0	93.2%	1731	0	96.0%
mixed_impact_subset_2022	441	441	0	100.0%	416	0	94.3%	414	12	93.9%
mixed_kunga_msk_2022	337	337	0	100.0%	278	14	82.5%	257	70	76.3%
mixed_msk_tcga_2021	2150	2149	0	100.0%	2022	0	94.0%	2139	0	99.5%
mixed_pipseq_2017	52588	52383	100	99.6%	45508	3	86.5%	50039	46	95.2%
mm_broad	11142	11129	7	99.9%	10705	0	96.1%	10987	1	98.6%
mng_utoronto_2021	1534	1534	0	100.0%	1437	3	93.7%	0	0	0.0%
mnm_washu_2016	801	800	1	99.9%	492	0	61.4%	730	35	91.1%
mpcproject_broad_2021	18539	18516	2	99.9%	11981	0	64.6%	17699	0	95.5%
mpn_cimr_2013	1496	1496	0	100.0%	1339	0	89.5%	1459	21	97.5%
mpnst_mskcc	4567	4557	4	99.8%	835	0	18.3%	3081	0	67.5%
mrt_bcgsc_2016	851	850	1	99.9%	302	0	35.5%	797	0	93.7%
msk_access_2021	7358	7348	4	99.9%	6964	0	94.6%	7047	5	95.8%
msk_ch_2020	11076	11072	2	100.0%	10657	1	96.2%	10984	3	99.2%
msk_ch_2023	30074	30074	0	100.0%	18691	150	62.2%	23107	6111	76.8%
msk_ch_ped_2021	40	40	0	100.0%	40	0	100.0%	39	0	97.5%
msk_chord_2024	208544	208388	75	99.9%	199846	84	95.8%	200725	3176	96.3%
msk_ctdna_vte_2024	10590	10583	0	99.9%	9980	0	94.2%	10125	5	95.6%
msk_impact_2017	78263	78211	28	99.9%	74496	123	95.2%	71133	4055	90.9%
msk_impact_50k_2026	479096	478783	59	99.9%	455838	4	95.1%	459316	161	95.9%
msk_met_2021	230419	230245	97	99.9%	220142	149	95.5%	216754	5303	94.1%
msk_spectrum_tme_2022	288	288	0	100.0%	263	0	91.3%	284	0	98.6%
mtnn_msk_2022	646	646	0	100.0%	609	0	94.3%	626	0	96.9%
nbl_amc_2012	568	568	0	100.0%	559	0	98.4%	562	1	98.9%
nbl_broad_2013	5291	5285	5	99.9%	4903	0	92.7%	5204	28	98.4%
nbl_target_2018_pub	1035	1035	0	100.0%	271	0	26.2%	889	0	85.9%
nbl_ucologne_2015	920	917	1	99.7%	876	0	95.2%	895	12	97.3%
nccrcc_genentech_2014	4708	4703	3	99.9%	4569	0	97.0%	4627	65	98.3%
nepc_wcm_2016	7363	7362	1	100.0%	7223	0	98.1%	7348	0	99.8%
nhl_bcgsc_2011	716	716	0	100.0%	671	0	93.7%	712	0	99.4%
nhl_bcgsc_2013	9846	9836	6	99.9%	8923	0	90.6%	9775	0	99.3%
normal_skin_fibroblast_2024	3006	2989	1	99.4%	2114	0	70.3%	2233	2	74.3%
normal_skin_keratinocytes_2024	25824	25760	1	99.8%	16145	0	62.5%	21495	6	83.2%
normal_skin_melanocytes_2024	76480	76347	1	99.8%	32829	0	42.9%	67868	50	88.7%
npc_nusingapore	1575	1572	3	99.8%	1548	0	98.3%	1565	2	99.4%
nsclc_ctdx_msk_2022	9733	9719	0	99.9%	9339	0	96.0%	9319	3	95.7%
nsclc_mskcc_2015	4180	4178	1	100.0%	4086	0	97.8%	4173	0	99.8%
nsclc_mskcc_2018	61014	60925	34	99.9%	25781	11	42.3%	39244	627	64.3%
nsclc_pd1_msk_2018	2517	2515	1	99.9%	2444	7	97.1%	2396	47	95.2%
nsclc_tcga_broad_2016	393371	392853	168	99.9%	388266	39	98.7%	383568	3194	97.5%
nsclc_tracerx_2017	209018	208756	123	99.9%	113526	5	54.3%	200977	81	96.2%
nsclc_unito_2016	124	124	0	100.0%	124	0	100.0%	118	6	95.2%
ntrk_msk_2019	440	439	1	99.8%	416	1	94.5%	379	45	86.1%
odg_msk_2017	281	281	0	100.0%	252	1	89.7%	233	27	82.9%
ov_tcga	20215	20195	9	99.9%	19567	8	96.8%	19566	363	96.8%
ov_tcga_pan_can_atlas_2018	53204	53149	8	99.9%	44929	0	84.4%	52323	0	98.3%
ov_tcga_pub	19420	19404	7	99.9%	18541	5	95.5%	18776	360	96.7%
paac_jhu_2014	2745	2745	0	100.0%	2520	1	91.8%	2543	161	92.6%
paac_msk_jco_2023	285	284	0	99.6%	275	0	96.5%	271	4	95.1%
paad_cptac_2021	6327	6327	0	100.0%	4411	1426	69.7%	0	0	0.0%
paad_icgc	2627	2625	1	99.9%	2493	0	94.9%	2595	8	98.8%
paad_qcmg_uq_2016	23536	23257	24	98.8%	20902	4	88.8%	22712	253	96.5%
paad_tcga	30357	30334	9	99.9%	30003	0	98.8%	30309	12	99.8%
paad_tcga_pan_can_atlas_2018	31394	31360	1	99.9%	27384	0	87.2%	31091	0	99.0%
paad_utsw_2015	7259	7238	17	99.7%	6784	3	93.5%	7036	112	96.9%
pact_jhu_2011	444	444	0	100.0%	408	0	91.9%	441	0	99.3%
paired_bladder_2022	29264	29242	14	99.9%	26744	7	91.4%	27159	129	92.8%
pan_origimed_2020	99895	99839	4	99.9%	85708	0	85.8%	96383	3	96.5%
pancan_mimsi_msk_2024	90454	90435	5	100.0%	86965	0	96.1%	89400	12	98.8%
pancan_pcawg_2020	382937	382678	43	99.9%	370669	3	96.8%	375810	77	98.1%
pancreas_msk_2024	1609	1609	0	100.0%	1534	0	95.3%	1574	0	97.8%
panet_arcnet_2017	3097	3090	4	99.8%	2610	0	84.3%	2929	3	94.6%
panet_jhu_2011	157	157	0	100.0%	153	0	97.5%	155	2	98.7%
panet_msk_2018	921	921	0	100.0%	887	0	96.3%	911	0	98.9%
panet_msk_erc_2023	683	683	0	100.0%	670	0	98.1%	678	0	99.3%
panet_shanghai_2013	78	78	0	100.0%	78	0	100.0%	78	0	100.0%
past_dkfz_heidelberg_2013	236	236	0	100.0%	230	0	97.5%	231	2	97.9%
pcnsl_mayo_2015	1560	1558	0	99.9%	1520	2	97.4%	1550	5	99.4%
pcnsl_msk_2024	1433	1433	0	100.0%	1393	0	97.2%	1417	0	98.9%
pcpg_tcga	4662	4646	15	99.7%	3730	19	80.0%	4202	180	90.1%
pcpg_tcga_pan_can_atlas_2018	2666	2660	0	99.8%	2349	0	88.1%	2629	0	98.6%
pcpg_tcga_pub	3664	3658	4	99.8%	3400	0	92.8%	3630	6	99.1%
pdac_msk_2024	10603	10596	5	99.9%	10150	0	95.7%	10130	215	95.5%
pediatric_dkfz_2017	17989	17946	22	99.8%	16806	5	93.4%	17536	290	97.5%
plmeso_msk_2024	181	181	0	100.0%	64	0	35.4%	140	2	77.3%
plmeso_nyu_2015	517	515	1	99.6%	497	0	96.1%	507	6	98.1%
pog570_bcgsc_2020	8141138	8140797	19	100.0%	75488	0	0.9%	3533913	2	43.4%
pptc_2019	42900	42860	18	99.9%	42090	11	98.1%	42611	157	99.3%
prad_broad_2013	2755	2750	2	99.8%	2617	4	95.0%	2682	41	97.4%
prad_broad	5764	5755	5	99.8%	5626	4	97.6%	5699	43	98.9%
prad_cdk12_mskcc_2020	4097	4089	7	99.8%	3863	3	94.3%	3776	209	92.2%
prad_cpcg_2017	6152	6145	5	99.9%	6061	0	98.5%	6145	0	99.9%
prad_eururol_2017	50803	50799	3	100.0%	1741	3	3.4%	50190	8	98.8%
prad_fhcrc	32763	32726	16	99.9%	19903	1	60.7%	31521	466	96.2%
prad_mcspc_mskcc_2020	1866	1865	0	99.9%	1788	0	95.8%	1827	1	97.9%
prad_mich	3853	3851	0	99.9%	3785	0	98.2%	3843	4	99.7%
prad_msk_2019	49	49	0	100.0%	45	0	91.8%	46	3	93.9%
prad_msk_mdanderson_2023	129756	129010	319	99.4%	30507	19	23.5%	78861	0	60.8%
prad_msk_stopsack_2021	9005	8995	0	99.9%	8612	0	95.6%	8809	2	97.8%
prad_mskcc_2017	1709	1707	1	99.9%	1617	1	94.6%	1514	162	88.6%
prad_mskcc_cheny1_organoids_2014	983	983	0	100.0%	236	2	24.0%	969	5	98.6%
prad_mskcc	320	320	0	100.0%	304	0	95.0%	316	3	98.8%
prad_organoids_msk_2022	13362	13351	2	99.9%	13024	1	97.5%	13200	4	98.8%
prad_p1000	95337	95242	41	99.9%	80740	2	84.7%	87135	312	91.4%
prad_pik3r1_msk_2021	4473	4463	8	99.8%	4225	0	94.5%	4200	134	93.9%
prad_su2c_2015	38586	38017	127	98.5%	22313	17	57.8%	29987	3502	77.7%
prad_su2c_2019	64566	64496	38	99.9%	50883	35	78.8%	49388	11361	76.5%
prad_tcga	40731	40632	49	99.8%	36719	47	90.2%	38691	919	95.0%
prad_tcga_pan_can_atlas_2018	34192	34139	7	99.8%	30405	0	88.9%	33803	0	98.9%
prad_tcga_pub	14045	13838	83	98.5%	11932	0	85.0%	13407	36	95.5%
prostate_dkfz_2018	1011490	964991	46480	95.4%	11949	0	1.2%	505897	3	50.0%
prostate_msk_2024	10845	10833	1	99.9%	10353	0	95.5%	10600	2	97.7%
prostate_pcbm_swiss_2019	27134	27056	57	99.7%	25886	95	95.4%	26614	64	98.1%
ptad_msk_2024	861	860	0	99.9%	847	0	98.4%	770	28	89.4%
rbl_cfdna_msk_2020	35940	35932	0	100.0%	17719	2	49.3%	29027	17	80.8%
rbl_mskcc_2020	278	278	0	100.0%	259	0	93.2%	267	0	96.0%
rectal_msk_2019	3222	3222	0	100.0%	3096	2	96.1%	2919	273	90.6%
rectal_msk_2022	36742	36709	28	99.9%	30159	33	82.1%	32680	3086	88.9%
rms_msk_2023	22	22	0	100.0%	22	0	100.0%	20	1	90.9%
rms_nih_2014	641	641	0	100.0%	528	0	82.4%	616	1	96.1%
rt_target_2018_pub	122	121	0	99.2%	100	0	82.0%	119	0	97.5%
sarc_mskcc	45	45	0	100.0%	43	0	95.6%	45	0	100.0%
sarc_tcga	20376	20292	9	99.6%	16701	4	82.0%	19421	191	95.3%
sarc_tcga_pan_can_atlas_2018	31484	31448	1	99.9%	22978	0	73.0%	30591	0	97.2%
sarc_tcga_pub	12877	12817	5	99.5%	10589	3	82.2%	12365	125	96.0%
sarcoma_msk_2022	11535	11531	1	100.0%	9371	1	81.2%	9510	4	82.4%
sarcoma_msk_2023	326	326	0	100.0%	315	0	96.6%	315	3	96.6%
sarcoma_ucla_2024	467	467	0	100.0%	392	0	83.9%	446	0	95.5%
scco_mskcc	19	19	0	100.0%	17	0	89.5%	19	0	100.0%
sclc_cancercell_gardner_2017	127020	126201	523	99.4%	42816	608	33.7%	108801	627	85.7%
sclc_clcgp	8723	8712	6	99.9%	8542	0	97.9%	8467	80	97.1%
sclc_jhu	7977	7971	2	99.9%	7860	0	98.5%	7953	1	99.7%
sclc_uc_2024	28805	28740	13	99.8%	26915	1	93.4%	27818	20	96.6%
sft_sysucc_2023	1282	1282	0	100.0%	1229	0	95.9%	1223	0	95.4%
skcm_broad_brafresist_2012	47618	47563	26	99.9%	46176	38	97.0%	43712	2773	91.8%
skcm_broad	239255	239032	83	99.9%	87802	8	36.7%	215481	208	90.1%
skcm_broad_dfarber	9318	9305	5	99.9%	9124	1	97.9%	8993	16	96.5%
skcm_dfci_2015	54242	54186	18	99.9%	53085	0	97.9%	54077	0	99.7%
skcm_mskcc_2014	38543	38491	19	99.9%	37437	0	97.1%	38349	0	99.5%
skcm_tcga	324158	323647	279	99.8%	309747	41	95.6%	321545	725	99.2%
skcm_tcga_pan_can_atlas_2018	556864	556087	81	99.9%	492557	0	88.5%	552040	0	99.1%
skcm_tcga_pub_2015	290341	289579	253	99.7%	278968	40	96.1%	278082	761	95.8%
skcm_vanderbilt_mskcc_2015	822	822	0	100.0%	811	0	98.7%	766	49	93.2%
skcm_yale	26169	26160	7	100.0%	25932	0	99.1%	25236	41	96.4%
soft_tissue_msk_2023	78	78	0	100.0%	77	0	98.7%	75	0	96.2%
stad_oncosg_2018	861309	861123	39	100.0%	32100	1	3.7%	223277	559000	25.9%
stad_pfizer_uhongkong	17901	17874	23	99.8%	17221	8	96.2%	16152	1657	90.2%
stad_tcga	209217	209027	72	99.9%	190519	68	91.1%	191135	14434	91.4%
stad_tcga_pan_can_atlas_2018	242605	242367	41	99.9%	212589	0	87.6%	238161	0	98.2%
stad_tcga_pub	148520	148425	46	99.9%	145017	23	97.6%	142396	5222	95.9%
stad_uhongkong	7036	7025	6	99.8%	4554	0	64.7%	5564	867	79.1%
stad_utokyo	6616	6611	5	99.9%	2412	1	36.5%	5554	68	83.9%
stes_tcga_pub	241898	241530	88	99.8%	216467	107	89.5%	219859	17031	90.9%
summit_2018	1042	1042	0	100.0%	980	19	94.0%	869	142	83.4%
tet_nci_2014	790	790	0	100.0%	729	0	92.3%	775	6	98.1%
tgct_tcga	14672	14603	10	99.5%	12034	3	82.0%	13904	93	94.8%
tgct_tcga_pan_can_atlas_2018	3418	3410	3	99.8%	2737	0	80.1%	3337	0	97.6%
thca_tcga	7458	7453	1	99.9%	7180	2	96.3%	7368	19	98.8%
thca_tcga_pan_can_atlas_2018	11857	11845	2	99.9%	10246	0	86.4%	11730	0	98.9%
thca_tcga_pub	6772	6769	0	100.0%	6527	2	96.4%	6669	15	98.5%
thym_tcga	3064	2998	3	97.8%	2500	2	81.6%	2792	116	91.1%
thym_tcga_pan_can_atlas_2018	4919	4909	2	99.8%	3460	0	70.3%	4657	0	94.7%
thyroid_mskcc_2016	564	564	0	100.0%	495	4	87.8%	474	27	84.0%
tmb_mskcc_2018	20563	20541	11	99.9%	19576	25	95.2%	18458	1051	89.8%
uccc_nih_2017	1700	1699	1	99.9%	1607	0	94.5%	1677	1	98.6%
ucec_ancestry_cds_msk_2023	15228	15227	1	100.0%	13973	0	91.8%	14947	4	98.2%
ucec_ccr_cfdna_msk_2022	597	597	0	100.0%	569	0	95.3%	588	0	98.5%
ucec_cptac_2020	52063	51365	82	98.7%	49441	40	95.0%	44734	5677	85.9%
ucec_msk_2018	2545	2545	0	100.0%	2441	4	95.9%	2241	278	88.1%
ucec_msk_2024	1568	1568	0	100.0%	1494	1	95.3%	1512	45	96.4%
ucec_tcga	184861	184551	108	99.8%	175760	36	95.1%	183214	631	99.1%
ucec_tcga_pan_can_atlas_2018	935656	934830	42	99.9%	704406	0	75.3%	906669	0	96.9%
ucec_tcga_pub	184826	184516	108	99.8%	175742	36	95.1%	183196	626	99.1%
ucs_jhu_2014	19148	19135	7	99.9%	17934	2	93.7%	18800	213	98.2%
ucs_msk_2024	3825	3825	0	100.0%	3733	0	97.6%	3803	1	99.4%
ucs_tcga	11339	11251	5	99.2%	9977	1	88.0%	10690	163	94.3%
ucs_tcga_pan_can_atlas_2018	10409	10401	0	99.9%	9034	0	86.8%	10282	0	98.8%
um_qimr_2016	299	299	0	100.0%	289	0	96.7%	276	19	92.3%
urcc_mskcc_2016	159	159	0	100.0%	155	0	97.5%	157	2	98.7%
usarc_msk_2020	346	346	0	100.0%	337	1	97.4%	323	16	93.4%
utuc_cornell_baylor_mdacc_2019	4132	4131	1	100.0%	4088	0	98.9%	4122	2	99.8%
utuc_igbmc_2021	4254	4252	0	100.0%	4135	0	97.2%	4237	0	99.6%
utuc_msk_2019	2273	2273	0	100.0%	2168	6	95.4%	2141	97	94.2%
utuc_mskcc_2015	1112	1112	0	100.0%	1074	0	96.6%	1089	11	97.9%
utuc_pdx_msk_2019	2128	2128	0	100.0%	1984	0	93.2%	2082	0	97.8%
uvm_tcga	2174	2172	2	99.9%	2068	0	95.1%	2144	12	98.6%
uvm_tcga_pan_can_atlas_2018	1935	1934	0	99.9%	1749	0	90.4%	1923	0	99.4%
vsc_cuk_2018	3037	3034	1	99.9%	2948	2	97.1%	2996	25	98.6%
wt_target_2018_pub	882	879	3	99.7%	840	10	95.2%	820	51	93.0%
Total	30612130	30529635	64879	99.7%	14393516	38002	47.0%	21993559	802994	71.8%

Consequence Category Breakdown

Study	delins_normalized	gene_model_change	match	mismatch	no_cds_data	position_shift	transcript_model_change	upstream_reclassified
acbc_mskcc_2015	0	0	254	0	0	0	0	0
acc_2019	0	0	10735	4	1	0	1	126
acc_tcga	1	0	20101	16	7	2	0	39
acc_tcga_pan_can_atlas_2018	0	0	11525	1	5	5	1	123
acyc_fmi_2014	0	0	29	0	0	0	0	0
acyc_jhu_2016	0	0	394	0	0	0	0	2
acyc_mda_2015	0	0	806	1	1	0	0	7
acyc_mgh_2016	0	9	1439	2	0	0	0	4
acyc_mskcc_2013	0	0	708	0	0	0	0	0
acyc_sanger_2013	0	0	308	1	0	0	0	1
all_phase2_target_2018_pub	0	0	760	0	0	0	0	4
all_stjude_2013	0	0	720	0	0	0	0	15
all_stjude_2015	0	0	80	0	0	0	0	0
all_stjude_2016	0	0	1234	1	0	0	0	36
aml_ohsu_2018	0	0	9900	5	4	1	0	0
aml_ohsu_2022	0	0	11917	2	4	4	0	40
aml_stjude_2024	0	0	1697	1	0	0	0	0
aml_target_2018_pub	0	0	556	0	0	0	0	1
ampca_bcm_2016	0	0	28689	15	2	0	0	42
angs_painter_2025	0	3	18557	1	7	25	2	219
angs_project_painter_2018	0	0	23974	22	0	0	2	60
appendiceal_msk_2022	1	0	1080	1	0	0	0	2
asclc_msk_2024	0	0	240	0	0	0	0	0
bcc_unige_2016	76	0	233520	176	122	15	10	534
bfn_duke_nus_2015	0	0	417	0	0	0	0	0
biliary_tract_summit_2022	0	0	191	0	0	0	0	1
bladder_columbia_msk_2018	0	0	3506	0	0	0	0	123
bladder_msk_2023	0	0	6616	2	0	2	0	380
blca_bcan_hcrn_2022	1	0	5600	0	0	0	1	5
blca_bgi	0	0	11220	5	0	0	0	14
blca_cornell_2016	0	0	19252	15	11	3	0	111
blca_dfarber_mskcc_2014	0	0	21132	17	13	1	13	189
blca_msk_2024	2	0	3644	3	3	0	0	167
blca_msk_tcga_2020	0	3	133076	93	34	7	12	657
blca_mskcc_solit_2012	0	0	103	0	0	0	0	0
blca_mskcc_solit_2014	0	0	1169	0	0	0	0	8
blca_nmibc_2017	0	0	1529	1	0	0	0	79
blca_pdx_msk_2025	0	0	2467	1	0	1	0	81
blca_plasmacytoid_mskcc_2016	0	0	452	0	0	0	0	11
blca_tcga	0	1	39210	29	12	3	0	57
blca_tcga_pan_can_atlas_2018	0	3	153451	24	42	71	8	1103
blca_tcga_pub_2017	0	3	131417	76	0	1	1	162
blca_tcga_pub	0	1	39230	27	12	3	0	53
bm_nsclc_mskcc_2023	1	0	4299	0	0	0	0	12
bowel_colitis_msk_2022	0	0	1885	0	0	0	0	11
braf_msk_impact_2024	0	0	776	0	0	0	0	18
brain_cptac_2020	0	0	9704	3	2	27	5	210
brca_bccrc	0	0	2391	3	0	0	0	3
brca_bccrc_xenograft_2014	0	0	18000	2	3	0	0	684
brca_broad	0	0	4976	2	0	0	0	7
brca_cptac_2020	0	0	28880	0	0	10	0	128
brca_dfci_2020	0	0	13465	1	4	4	0	139
brca_dldccc_2022	0	0	24143	0	2	2	0	364
brca_fuscc_2020	0	0	625	0	0	0	0	0
brca_hta9_htan_2022	0	0	2024	0	1	0	0	78
brca_igr_2015	0	0	22831	21	9	1	5	82
brca_jup_msk_2020	0	0	104	0	0	0	0	0
brca_mapk_hp_msk_2021	0	0	636	0	0	0	0	1
brca_mbcproject_2022	0	0	54898	3	27	49	2	992
brca_mbcproject_wagle_2017	0	0	23962	16	0	0	0	49
brca_metabric	0	0	17272	0	0	0	0	0
brca_mskcc_2019	0	0	657	0	0	0	0	1
brca_pareja_msk_2020	0	0	3681	0	0	2	0	11
brca_sanger	0	0	7217	7	1	0	0	14
brca_smc_2018	0	0	6872	5	3	0	1	4
brca_tcga	0	39	90022	53	35	6	4	331
brca_tcga_pan_can_atlas_2018	3	0	129091	14	60	67	15	1245
brca_tcga_pub2015	2	19	69829	49	27	9	5	28
brca_tcga_pub	0	0	33701	11	3	0	2	273
breast_alpelisib_2020	0	0	833	0	0	0	0	0
breast_ink4_msk_2021	1	0	8165	1	0	1	0	14
breast_msk_2018	1	0	9294	6	0	0	0	13
ccle_broad_2019	84	7	1209285	898	5	23	5	1951
ccle_genentech_2014	0	4	263757	60	7	12	8	1527
ccrcc_dfci_2019	0	0	4112	3	0	0	14	17
ccrcc_irc_2014	0	0	3443	1	0	0	0	0
ccrcc_sjuh_2023	0	0	1472	4	0	0	0	0
ccrcc_utokyo_2013	0	0	69319	3	1	1	4	6777
cellline_ccle_broad	5	0	90326	44	0	0	6	1036
cellline_nci60	0	2	73547	18	0	1	362	220
cervix_msk_2023	0	0	1070	0	0	0	0	1
cesc_tcga	0	122	45903	6	2	2	5	507
cesc_tcga_pan_can_atlas_2018	1	2	98830	9	31	48	8	1857
cfdna_msk_2019	0	0	3886	0	0	0	0	3
chl_sccc_2023	0	0	6741	8	0	4	1	58
chol_icgc_2017	0	0	5090	0	0	0	0	17
chol_jhu_2013	0	0	1973	2	1	0	0	4
chol_msk_2018	0	0	761	0	0	0	0	6
chol_nccs_2013	0	0	243	0	0	0	0	0
chol_nus_2012	0	0	205	0	0	0	0	0
chol_tcga	0	48	6650	5	0	1	0	51
chol_tcga_pan_can_atlas_2018	0	0	4394	0	3	4	0	99
cll_broad_2015	0	0	12598	10	0	0	0	6
cll_broad_2022	0	1	40245	7	0	15	0	133
cll_iuopa_2015	0	1	13274	3	0	0	0	353
cllsll_icgc_2011	0	0	1109	0	0	0	0	1
coad_caseccc_2015	0	0	2691	1	1	0	0	3
coad_cptac_2019	0	0	73482	54	29	7	1	260
coad_silu_2022	0	0	139168	15	28	69	1	846
coadread_cass_2020	0	0	49809	29	14	35	62	466
coadread_dfci_2016	0	318	329131	244	78	11	76	1565
coadread_genentech	0	1	36210	17	10	0	2	31
coadread_mskcc	0	0	779	0	0	0	0	2
coadread_mskresistance_2022	36	0	9276	11	0	1	3	15
coadread_tcga	0	0	84390	34	37	5	1	128
coadread_tcga_pan_can_atlas_2018	1	0	329425	67	125	125	18	2849
coadread_tcga_pub	3	0	91832	14	37	17	1	228
crc_apc_impact_2020	0	0	4577	0	0	1	0	15
crc_dd_2022	0	0	1816	0	0	0	0	7
crc_eo_2020	0	0	20170	1	0	4	0	23
crc_hta11_htan_2021	2	0	52293	14	28	44	4	640
crc_hta8_htan_2024	0	0	187	0	0	0	0	0
crc_msk_2017	0	13	18085	4	1	4	0	38
crc_nigerian_2020	0	0	1568	0	0	1	0	2
crc_orion_2024	0	0	1054	0	0	0	0	8
crc_sysucc_2022	0	233	354354	80	145	301	4	1759
cscc_dfarber_2015	0	0	2743	3	0	0	0	11
cscc_hgsc_bcm_2014	76	0	107410	66	50	15	1	416
cscc_ucsf_2021	0	0	146195	0	0	0	0	0
csf_msk_2024	0	0	3890	1	0	0	1	52
ctcl_columbia_2015	0	0	2473	0	0	0	0	0
desm_broad_2015	0	0	28213	22	7	3	0	86
difg_glass_2019	1	40	2151233	9	99	155	99	251286
difg_glass	2	20	1372177	5	76	122	63	155930
difg_msk_2023	0	0	1124	0	0	0	0	70
dlbc_broad_2012	2	0	11623	4	3	1	0	22
dlbc_tcga	0	60	16814	11	0	0	0	33
dlbc_tcga_pan_can_atlas_2018	1	0	7636	5	5	34	1	102
dlbcl_dfci_2018	0	0	20307	18	0	0	0	3
dlbcl_duke_2017	0	0	7105	0	0	0	0	0
egc_msk_2017	0	0	2243	0	0	0	0	2
egc_msk_2023	1	0	7469	0	0	1	0	9
egc_msk_tp53_ccr_2022	0	0	2123	1	0	0	0	2
egc_mskcc_2020	0	0	3410	3	0	0	0	2
egc_tmucih_2015	0	0	13840	7	2	4	1	12
egc_trap_ccr_msk_2023	1	0	14371	2	3	6	0	320
egc_trap_msk_2020	0	0	6452	2	2	2	0	74
es_dfarber_broad_2014	0	0	15209	6	0	1	0	16
es_dsrct_msk_2023	0	0	321	0	0	0	0	13
es_iocurie_2014	0	0	1964	2	0	0	1	76
esca_broad	0	0	30741	10	6	2	9	255
esca_tcga	0	188	57914	23	1	0	4	472
esca_tcga_pan_can_atlas_2018	0	0	46756	6	26	23	2	968
escc_icgc	0	1	7258	5	2	0	0	13
escc_ucla_2014	0	0	3028	1	0	0	0	3
gbc_msk_2018	0	0	812	0	0	0	0	7
gbc_mskcc_2022	0	0	1637	1	0	1	1	13
gbc_shanghai_2014	0	0	5011	4	0	0	1	249
gbm_columbia_2019	0	1	856	1	0	1	2	2
gbm_cptac_2021	0	0	6667	0	0	0	0	0
gbm_mayo_pdx_sarkaria_2019	0	1	178489	98	27	20	289	14469
gbm_tcga	0	0	21977	12	13	5	0	66
gbm_tcga_pan_can_atlas_2018	1	0	68269	14	29	38	1	450
gbm_tcga_pub2013	0	0	16289	6	8	1	0	21
gbm_tcga_pub	0	0	452	0	0	0	0	0
gct_msk_2016	0	0	334	0	0	0	0	0
gct_msk_2020	9	1	281	0	0	0	0	0
gist_msk_2022	0	0	1074	1	0	0	0	4
gist_msk_2023	0	0	991	0	0	0	0	1
glioma_msk_2018	0	0	2327	0	0	0	0	58
glioma_mskcc_2019	0	0	8307	1	0	0	0	597
hcc_clca_2024	5	3	221465	10396	8	16	7	51323
hcc_inserm_fr_2015	0	0	27909	22	8	1	1	229
hcc_jcopo_msk_2023	0	0	369	2	0	0	0	54
hcc_meric_2021	0	0	24422	8	1	20	1	36
hcc_msk_2024	0	0	6563	1	0	1	2	233
hcc_msk_venturaa_2018	0	0	60	0	0	0	0	7
hcc_mskimpact_2018	0	0	534	1	0	0	0	70
hccihch_pku_2019	0	0	17456	2	3	3	1	79
heme_msk_impact_2022	3	0	12824	4	0	1	0	61
hgsoc_msk_2021	0	0	183	0	0	0	0	0
histiocytosis_cobi_msk_2019	24	1	391	1	0	0	2	0
hnc_mskcc_2016	1	0	1352	0	0	0	0	37
hnsc_broad	0	0	9578	9	3	1	0	12
hnsc_jhu	0	0	601	0	0	0	0	0
hnsc_mdanderson_2013	0	0	3454	3	1	1	2	10
hnsc_tcga	0	23	119763	110	42	4	3	457
hnsc_tcga_pan_can_atlas_2018	1	0	123324	14	56	83	2	895
hnsc_tcga_pub	2	0	52279	5	26	15	1	341
ihch_ismms_2015	0	0	216	0	0	0	0	1
ihch_msk_2021	0	0	1608	1	0	0	0	19
ihch_mskcc_2020	0	0	799	1	0	0	0	5
ihch_smmu_2014	0	58	9600	2	0	14	0	39
ilc_msk_2023	0	0	90	0	0	0	0	1
kich_tcga	0	34	7492	9	1	1	0	22
kich_tcga_pan_can_atlas_2018	0	0	3244	0	0	3	1	20
kich_tcga_pub	0	0	1785	1	0	0	0	1
kirc_bgi	0	0	531	0	0	0	0	1
kirc_tcga	0	23	46727	40	15	5	2	200
kirc_tcga_pan_can_atlas_2018	1	0	30810	9	15	14	1	223
kirc_tcga_pub	0	0	37159	40	10	7	1	508
kirp_tcga	0	123	18709	17	0	0	1	28
kirp_tcga_pan_can_atlas_2018	0	0	34023	4	8	22	5	312
laml_tcga	0	12	2544	0	4	1	1	22
laml_tcga_pan_can_atlas_2018	0	0	10778	5	8	1	2	53
laml_tcga_pub	0	0	2504	0	4	1	1	22
lcll_broad_2013	0	0	3114	1	3	1	0	6
lgg_tcga	0	0	9869	1	4	0	0	11
lgg_tcga_pan_can_atlas_2018	0	0	39030	4	20	15	1	229
lgg_ucsf_2014	9	0	15109	9	8	3	0	17
lgggbm_tcga_pub	0	0	30706	12	0	0	0	11
lgsoc_mapk_msk_2022	0	0	202	0	0	0	0	0
liad_inserm_fr_2014	0	0	1165	1	0	2	0	9
lihc_amc_prv	0	0	27514	15	0	0	4	47
lihc_riken	0	0	53	0	0	0	0	0
lihc_tcga	0	202	53467	28	2	0	0	78
lihc_tcga_pan_can_atlas_2018	0	0	59458	12	22	33	3	617
luad_broad	17	2	65520	27	44	4	2	151
luad_cas_2020	0	0	17315	2	12	22	5	561
luad_cptac_2020	0	60	31199	250	23	91	340	0
luad_msk_npjpo_2021	2	0	3561	2	0	0	1	13
luad_mskcc_2015	0	0	9028	2	2	1	0	16
luad_mskcc_2020	1	0	4789	3	0	0	1	20
luad_mskcc_2023_met_organotropism	36	2	111852	9	70	55	10	1794
luad_mskimpact_2021	0	0	1030	0	0	0	0	0
luad_oncosg_2020	0	5	71692	55	41	2	16	1867
luad_tcga	25	0	72286	35	50	3	1	141
luad_tcga_pan_can_atlas_2018	1	2	241293	27	157	143	11	1595
luad_tcga_pub	25	0	72311	35	49	3	2	141
luad_tsp	2	0	1014	0	0	0	0	1
lung_msk_2017	6	0	7148	2	0	0	0	25
lung_msk_mind_2020	2	0	2935	0	0	0	2	12
lung_msk_pdx	2	0	3895	0	0	0	0	17
lung_nci_2022	0	0	8698	0	4	2	0	82
lung_pdx_msk_2021	0	0	793	0	0	0	0	5
lung_smc_2016	0	0	4067	2	0	2	0	3
lusc_cptac_2021	8	6	35135	44	5	17	13	214
lusc_tcga	0	0	65109	52	38	1	0	105
lusc_tcga_pan_can_atlas_2018	1	1	197405	32	90	128	17	1431
lusc_tcga_pub	19	0	72820	62	40	1	0	76
lymphoma_cellline_msk_2020	0	0	1116	0	0	0	0	3
makeanimpact_ccr_2023	0	0	254	0	0	0	0	0
mbc_msk_2021	0	0	504	0	1	0	0	5
mbl_broad_2012	0	0	1800	4	1	1	1	1
mbl_dkfz_2017	0	0	2143	0	0	0	0	57
mbl_icgc	0	0	1056	0	0	0	0	3
mbl_pcgp	0	0	557	0	0	0	0	1
mbl_sickkids_2016	0	0	4758	6	0	0	0	15
mbn_mdacc_2013	0	0	43454	30	0	2	42	1942
mbn_msk_2024	4	0	5677	5	0	0	0	25
mcl_idibips_2013	0	2	649	0	0	0	0	2
mds_iwg_2022	0	0	15613	0	0	1	0	71
mds_mskcc_2020	0	45	46589	93	3	1	0	130
mds_tokyo_2011	0	0	261	0	0	0	0	0
mel_dfci_2019	29	8	133636	88	0	1	20	257
mel_mskimpact_2020	21	0	18808	6	0	0	0	643
mel_tsam_liang_2017	0	0	31686	17	6	2	14	1297
mel_ucla_2016	0	0	26046	17	28	1	1	171
meso_tcga	0	82	5999	3	4	0	1	82
meso_tcga_pan_can_atlas_2018	0	0	3912	1	4	1	0	62
metastatic_solid_tumors_mich_2017	6	8	86550	73	40	14	38	341
mixed_allen_2018	0	0	166442	67	0	1	23	774
mixed_cfdna_msk_2020	0	0	1754	0	0	2	0	47
mixed_impact_subset_2022	0	0	435	0	0	0	0	6
mixed_kunga_msk_2022	0	0	337	0	0	0	0	0
mixed_msk_tcga_2021	0	0	2142	0	0	0	1	7
mixed_pipseq_2017	0	2	51985	100	38	42	23	398
mm_broad	1	0	11017	7	4	0	1	112
mng_utoronto_2021	0	0	1534	0	0	0	0	0
mnm_washu_2016	0	0	783	1	0	0	0	17
mpcproject_broad_2021	0	0	18227	2	5	12	4	289
mpn_cimr_2013	0	0	1484	0	0	0	0	12
mpnst_mskcc	0	6	4028	4	0	0	0	529
mrt_bcgsc_2016	0	0	821	1	0	0	0	29
msk_access_2021	3	0	7252	4	0	2	1	96
msk_ch_2020	2	0	11034	2	0	0	0	38
msk_ch_2023	0	0	30074	0	0	0	0	0
msk_ch_ped_2021	0	0	40	0	0	0	0	0
msk_chord_2024	45	0	207906	75	0	6	30	482
msk_ctdna_vte_2024	4	0	10420	0	0	1	2	163
msk_impact_2017	24	0	76817	28	0	0	0	1394
msk_impact_50k_2026	131	0	471550	59	0	92	31	7233
msk_met_2021	57	0	227551	97	0	7	13	2694
msk_spectrum_tme_2022	0	0	288	0	0	0	0	0
mtnn_msk_2022	0	0	642	0	0	0	0	4
nbl_amc_2012	0	0	568	0	0	0	0	0
nbl_broad_2013	0	0	5278	5	1	0	0	7
nbl_target_2018_pub	0	0	962	0	0	0	0	73
nbl_ucologne_2015	1	0	914	1	1	0	0	3
nccrcc_genentech_2014	0	0	4700	3	2	0	0	3
nepc_wcm_2016	0	0	7347	1	0	0	0	15
nhl_bcgsc_2011	0	0	712	0	0	0	0	4
nhl_bcgsc_2013	0	0	9779	6	4	0	0	57
normal_skin_fibroblast_2024	6	0	2879	1	2	4	4	110
normal_skin_keratinocytes_2024	26	0	24737	1	7	17	13	1023
normal_skin_melanocytes_2024	27	0	71951	1	32	56	17	4396
npc_nusingapore	0	0	1567	3	0	0	0	5
nsclc_ctdx_msk_2022	3	0	9689	0	0	0	11	30
nsclc_mskcc_2015	0	0	4171	1	1	0	0	7
nsclc_mskcc_2018	0	6	56820	34	14	5	30	4105
nsclc_pd1_msk_2018	1	0	2503	1	0	0	0	12
nsclc_tcga_broad_2016	122	5	392622	168	202	20	1	231
nsclc_tracerx_2017	35	0	204967	123	79	8	17	3789
nsclc_unito_2016	0	0	124	0	0	0	0	0
ntrk_msk_2019	0	0	429	1	0	0	0	10
odg_msk_2017	0	0	260	0	0	0	0	21
ov_tcga	0	0	20174	9	7	3	1	21
ov_tcga_pan_can_atlas_2018	0	1	52760	8	17	26	3	389
ov_tcga_pub	0	0	19365	7	7	2	0	39
paac_jhu_2014	0	0	2731	0	0	0	0	14
paac_msk_jco_2023	1	0	284	0	0	0	0	0
paad_cptac_2021	0	0	6327	0	0	0	0	0
paad_icgc	0	0	2619	1	1	0	0	6
paad_qcmg_uq_2016	1	237	23150	24	5	0	12	107
paad_tcga	0	0	30305	9	14	0	0	29
paad_tcga_pan_can_atlas_2018	0	0	31163	1	21	10	2	197
paad_utsw_2015	0	0	7207	17	2	1	1	31
pact_jhu_2011	0	0	442	0	0	0	0	2
paired_bladder_2022	3	0	27682	14	0	4	1	1560
pan_origimed_2020	4	0	98646	4	0	2	46	1193
pancan_mimsi_msk_2024	4	0	90204	5	0	9	1	231
pancan_pcawg_2020	61	1	381076	43	0	153	1	1602
pancreas_msk_2024	0	0	1609	0	0	0	0	0
panet_arcnet_2017	0	0	3075	4	2	0	1	15
panet_jhu_2011	0	0	157	0	0	0	0	0
panet_msk_2018	0	0	917	0	0	0	0	4
panet_msk_erc_2023	0	0	682	0	0	0	0	1
panet_shanghai_2013	0	0	78	0	0	0	0	0
past_dkfz_heidelberg_2013	0	0	234	0	0	0	0	2
pcnsl_mayo_2015	0	0	1553	0	2	0	0	5
pcnsl_msk_2024	0	0	1430	0	0	0	0	3
pcpg_tcga	0	0	4594	15	1	0	0	52
pcpg_tcga_pan_can_atlas_2018	0	0	2644	0	1	5	0	16
pcpg_tcga_pub	0	0	3650	4	2	0	0	8
pdac_msk_2024	1	0	10584	5	0	0	1	12
pediatric_dkfz_2017	0	0	17891	22	18	1	2	55
plmeso_msk_2024	0	0	171	0	0	0	0	10
plmeso_nyu_2015	0	0	513	1	1	0	0	2
pog570_bcgsc_2020	0	106	7337123	19	93	70	53	803674
pptc_2019	0	0	42813	18	20	2	0	47
prad_broad_2013	0	0	2741	2	2	0	1	9
prad_broad	0	0	5751	5	4	0	0	4
prad_cdk12_mskcc_2020	0	0	4085	7	0	1	0	4
prad_cpcg_2017	0	0	6140	5	2	0	0	5
prad_eururol_2017	0	0	50343	3	1	0	0	456
prad_fhcrc	0	0	32391	16	12	1	8	335
prad_mcspc_mskcc_2020	0	0	1862	0	0	1	0	3
prad_mich	0	0	3849	0	2	0	0	2
prad_msk_2019	0	0	49	0	0	0	0	0
prad_msk_mdanderson_2023	0	356	80376	319	22	46	3	48634
prad_msk_stopsack_2021	0	0	8987	0	0	10	0	8
prad_mskcc_2017	1	0	1705	1	0	0	0	2
prad_mskcc_cheny1_organoids_2014	0	0	979	0	0	0	0	4
prad_mskcc	0	0	319	0	0	0	0	1
prad_organoids_msk_2022	1	1	13282	2	0	7	0	69
prad_p1000	3	0	95034	41	1	3	47	208
prad_pik3r1_msk_2021	0	0	4460	8	0	2	0	3
prad_su2c_2015	0	425	36940	127	5	2	10	1077
prad_su2c_2019	0	0	63963	38	2	1	29	533
prad_tcga	0	34	40423	49	11	4	1	209
prad_tcga_pan_can_atlas_2018	0	0	33945	7	12	31	3	194
prad_tcga_pub	0	116	13704	83	5	0	3	134
prostate_dkfz_2018	0	8	869857	46480	8	3	0	95134
prostate_msk_2024	0	0	10822	1	0	11	0	11
prostate_pcbm_swiss_2019	0	0	26840	57	8	7	6	216
ptad_msk_2024	0	0	857	0	0	1	0	3
rbl_cfdna_msk_2020	0	0	34924	0	0	0	8	1008
rbl_mskcc_2020	0	0	277	0	0	0	0	1
rectal_msk_2019	0	0	3220	0	0	0	0	2
rectal_msk_2022	0	0	36087	28	3	1	1	622
rms_msk_2023	0	0	22	0	0	0	0	0
rms_nih_2014	0	0	624	0	0	0	0	17
rt_target_2018_pub	0	1	119	0	0	0	0	2
sarc_mskcc	0	0	45	0	0	0	0	0
sarc_tcga	0	67	20119	9	0	1	7	173
sarc_tcga_pan_can_atlas_2018	0	1	30865	1	9	23	2	583
sarc_tcga_pub	0	54	12715	5	0	0	1	102
sarcoma_msk_2022	3	0	11518	1	0	0	0	13
sarcoma_msk_2023	0	0	325	0	0	0	0	1
sarcoma_ucla_2024	0	0	457	0	0	0	0	10
scco_mskcc	0	0	19	0	0	0	0	0
sclc_cancercell_gardner_2017	0	140	123400	523	56	6	94	2801
sclc_clcgp	5	0	8709	6	0	0	0	3
sclc_jhu	0	0	7960	2	4	0	0	11
sclc_uc_2024	11	0	28358	13	15	22	4	382
sft_sysucc_2023	0	0	1254	0	0	0	0	28
skcm_broad_brafresist_2012	7	0	47461	26	20	0	2	102
skcm_broad	19	1	230548	83	71	8	41	8484
skcm_broad_dfarber	1	0	9268	5	6	0	1	37
skcm_dfci_2015	0	0	54028	18	35	2	1	158
skcm_mskcc_2014	0	0	38312	19	27	5	1	179
skcm_tcga	0	25	322756	279	179	20	8	891
skcm_tcga_pan_can_atlas_2018	0	1	552346	81	318	351	26	3741
skcm_tcga_pub_2015	70	193	288543	253	175	22	49	1036
skcm_vanderbilt_mskcc_2015	0	0	815	0	0	0	0	7
skcm_yale	0	0	26138	7	2	0	0	22
soft_tissue_msk_2023	0	0	78	0	0	0	0	0
stad_oncosg_2018	0	28	858360	39	0	0	119	2763
stad_pfizer_uhongkong	0	0	17852	23	3	1	0	22
stad_tcga	0	106	208503	72	0	7	5	524
stad_tcga_pan_can_atlas_2018	3	3	240907	41	81	100	10	1460
stad_tcga_pub	0	0	148266	46	43	5	1	159
stad_uhongkong	0	0	6998	6	0	1	4	27
stad_utokyo	0	0	6339	5	0	0	0	272
stes_tcga_pub	0	265	240620	88	1	6	8	910
summit_2018	0	0	1022	0	0	0	0	20
tet_nci_2014	0	0	785	0	0	0	0	5
tgct_tcga	0	55	14469	10	3	1	0	134
tgct_tcga_pan_can_atlas_2018	0	0	3363	3	3	0	2	47
thca_tcga	1	1	7440	1	1	1	0	13
thca_tcga_pan_can_atlas_2018	0	0	11756	2	5	5	0	89
thca_tcga_pub	1	0	6726	0	1	1	0	43
thym_tcga	0	60	2977	3	0	0	3	21
thym_tcga_pan_can_atlas_2018	1	0	4805	2	3	3	1	104
thyroid_mskcc_2016	0	0	503	0	0	0	0	61
tmb_mskcc_2018	11	0	20023	11	0	0	0	518
uccc_nih_2017	0	0	1690	1	0	0	0	9
ucec_ancestry_cds_msk_2023	0	0	15168	1	0	0	0	59
ucec_ccr_cfdna_msk_2022	0	0	592	0	0	0	0	5
ucec_cptac_2020	0	94	51365	82	21	108	393	0
ucec_msk_2018	0	0	2542	0	0	0	0	3
ucec_msk_2024	0	0	1567	0	0	0	0	1
ucec_tcga	0	120	183997	108	70	10	2	554
ucec_tcga_pan_can_atlas_2018	4	12	920557	42	326	395	47	14273
ucec_tcga_pub	0	120	183963	108	65	10	7	553
ucs_jhu_2014	0	0	19081	7	4	1	1	54
ucs_msk_2024	0	0	3817	0	0	0	0	8
ucs_tcga	0	79	11203	5	3	0	1	48
ucs_tcga_pan_can_atlas_2018	0	1	10323	0	3	4	0	78
um_qimr_2016	0	0	296	0	0	0	0	3
urcc_mskcc_2016	0	0	159	0	0	0	0	0
usarc_msk_2020	0	0	345	0	0	0	0	1
utuc_cornell_baylor_mdacc_2019	0	0	4126	1	0	0	0	5
utuc_igbmc_2021	0	0	4244	0	1	1	0	8
utuc_msk_2019	0	0	2241	0	0	0	0	32
utuc_mskcc_2015	0	0	1103	0	0	0	0	9
utuc_pdx_msk_2019	0	0	2087	0	0	0	0	41
uvm_tcga	0	0	2171	2	0	0	0	1
uvm_tcga_pan_can_atlas_2018	0	0	1926	0	0	1	0	8
vsc_cuk_2018	0	2	3027	1	0	0	0	7
wt_target_2018_pub	0	0	877	3	0	0	0	2
Total	1273	4580	28972869	64879	4643	4077	3043	1556766

HGVSc Category Breakdown

Study	both_empty	delins_normalized	dup_vs_ins	maf_empty	match	mismatch	position_shift	transcript_model_change	vep_empty
acbc_mskcc_2015	0	0	0	0	244	10	0	0	0
acc_2019	105	61	6	99	10098	476	16	6	0
acc_tcga	12	33	12	29	18801	1234	14	31	0
acc_tcga_pan_can_atlas_2018	2	19	16	122	11425	0	66	10	0
acyc_fmi_2014	0	0	0	0	22	6	1	0	0
acyc_jhu_2016	2	0	3	0	349	40	0	2	0
acyc_mda_2015	1	6	1	6	718	80	1	2	0
acyc_mgh_2016	0	0	0	4	1441	0	0	0	9
acyc_mskcc_2013	0	0	0	0	678	30	0	0	0
acyc_sanger_2013	0	0	0	1	265	43	0	1	0
all_phase2_target_2018_pub	0	0	0	4	746	14	0	0	0
all_stjude_2013	4	0	1	13	715	0	2	0	0
all_stjude_2015	0	0	0	0	80	0	0	0	0
all_stjude_2016	12	4	1	24	1223	2	4	1	0
aml_ohsu_2018	0	0	16	0	9489	381	23	1	0
aml_ohsu_2022	0	0	13	42	11869	2	40	1	0
aml_stjude_2024	0	96	8	13	1576	0	5	0	0
aml_target_2018_pub	0	0	0	1	551	5	0	0	0
ampca_bcm_2016	10	0	55	33	24423	4193	0	34	0
angs_painter_2025	38	0	13	191	18519	0	48	2	3
angs_project_painter_2018	2	0	0	58	23996	0	2	0	0
appendiceal_msk_2022	2	8	2	0	1050	18	4	0	0
asclc_msk_2024	0	1	0	0	237	2	0	0	0
bcc_unige_2016	99	7992	24	465	221914	3794	42	123	0
bfn_duke_nus_2015	0	0	0	0	406	11	0	0	0
biliary_tract_summit_2022	1	2	0	0	188	1	0	0	0
bladder_columbia_msk_2018	111	0	0	12	3502	0	4	0	0
bladder_msk_2023	369	74	8	11	6522	1	15	0	0
blca_bcan_hcrn_2022	0	44	23	5	5514	0	21	0	0
blca_bgi	0	0	5	14	11122	83	12	3	0
blca_cornell_2016	43	0	0	88	19256	2	3	0	0
blca_dfarber_mskcc_2014	100	62	742	90	19281	217	796	76	1
blca_msk_2024	144	63	6	24	3567	2	10	3	0
blca_msk_tcga_2020	203	158	664	456	131125	465	725	81	5
blca_mskcc_solit_2012	0	0	0	0	99	4	0	0	0
blca_mskcc_solit_2014	7	8	1	1	1128	31	1	0	0
blca_nmibc_2017	79	12	2	0	1493	21	2	0	0
blca_pdx_msk_2025	72	47	4	10	2408	5	3	1	0
blca_plasmacytoid_mskcc_2016	12	3	0	0	437	8	3	0	0
blca_tcga	2	0	11	55	37929	1304	3	7	1
blca_tcga_pan_can_atlas_2018	30	147	80	1162	153018	0	228	32	5
blca_tcga_pub_2017	9	0	14	155	130457	971	51	0	3
blca_tcga_pub	2	2	11	51	38033	1220	3	3	1
bm_nsclc_mskcc_2023	6	114	4	6	4133	36	13	0	0
bowel_colitis_msk_2022	6	11	3	8	1859	3	6	0	0
braf_msk_impact_2024	18	8	1	0	767	0	0	0	0
brain_cptac_2020	144	0	95	117	9443	0	99	53	0
brca_bccrc	0	0	0	3	2381	9	4	0	0
brca_bccrc_xenograft_2014	1990	0	0	297	16402	0	0	0	0
brca_broad	2	14	11	5	4879	67	3	4	0
brca_cptac_2020	0	0	13	128	28843	0	34	0	0
brca_dfci_2020	20	0	1	122	13452	0	18	0	0
brca_dldccc_2022	28	0	18	342	24118	0	4	1	0
brca_fuscc_2020	0	0	0	0	625	0	0	0	0
brca_hta9_htan_2022	31	20	25	54	1936	2	30	5	0
brca_igr_2015	34	0	98	56	22714	24	21	2	0
brca_jup_msk_2020	0	0	0	0	104	0	0	0	0
brca_mapk_hp_msk_2021	1	9	1	0	602	22	2	0	0
brca_mbcproject_2022	230	0	8	818	54796	0	108	10	1
brca_mbcproject_wagle_2017	0	0	8	82	23870	45	21	1	0
brca_metabric	0	0	7	0	16959	271	35	0	0
brca_mskcc_2019	0	0	1	1	617	38	1	0	0
brca_pareja_msk_2020	0	0	0	11	3668	0	15	0	0
brca_sanger	5	0	3	11	7183	27	9	1	0
brca_smc_2018	0	0	0	4	6872	0	6	3	0
brca_tcga	8	0	145	328	83686	6030	19	235	39
brca_tcga_pan_can_atlas_2018	27	171	229	1241	127987	0	733	106	1
brca_tcga_pub2015	0	188	21	28	64894	4776	38	4	19
brca_tcga_pub	210	3	79	144	32159	1249	59	87	0
breast_alpelisib_2020	0	7	1	0	798	26	1	0	0
breast_ink4_msk_2021	5	126	15	9	7988	5	34	0	0
breast_msk_2018	8	135	19	5	8662	447	37	1	0
ccle_broad_2019	23	8515	931	10131	1175369	15996	1252	34	7
ccle_genentech_2014	29	0	0	1501	263802	0	34	8	1
ccrcc_dfci_2019	3	0	45	17	3945	60	59	17	0
ccrcc_irc_2014	0	23	0	0	3388	28	5	0	0
ccrcc_sjuh_2023	0	0	66	0	1383	0	27	0	0
ccrcc_utokyo_2013	34912	0	350	1026	39144	21	458	194	0
cellline_ccle_broad	516	599	2209	13386	72353	48	1936	370	0
cellline_nci60	105	0	8327	116	59428	30	5980	161	3
cervix_msk_2023	1	13	0	0	1055	0	2	0	0
cesc_tcga	27	0	215	494	44798	676	6	209	122
cesc_tcga_pan_can_atlas_2018	23	80	286	1842	97985	0	514	52	4
cfdna_msk_2019	0	31	0	3	3815	39	1	0	0
chl_sccc_2023	0	17	7	63	6702	0	22	1	0
chol_icgc_2017	0	0	9	17	5061	0	20	0	0
chol_jhu_2013	0	11	1	4	1953	9	1	1	0
chol_msk_2018	6	12	0	0	681	63	5	0	0
chol_nccs_2013	0	0	0	0	241	2	0	0	0
chol_nus_2012	0	0	0	0	202	3	0	0	0
chol_tcga	20	0	3	36	6272	244	1	131	48
chol_tcga_pan_can_atlas_2018	3	11	25	96	4333	0	30	2	0
cll_broad_2015	3	0	3	6	12517	78	7	0	0
cll_broad_2022	0	0	44	133	40179	0	44	0	1
cll_iuopa_2015	33	41	17	334	13115	52	36	2	1
cllsll_icgc_2011	0	7	0	1	1101	0	0	1	0
coad_caseccc_2015	1	0	1	2	2688	4	0	0	0
coad_cptac_2019	89	0	32	189	69673	3666	121	63	0
coad_silu_2022	0	0	86	846	138705	0	475	15	0
coadread_cass_2020	0	211	156	487	42605	683	6242	31	0
coadread_dfci_2016	633	0	3789	1041	288347	35514	32	1662	405
coadread_genentech	4	0	7	27	36160	5	66	1	1
coadread_mskcc	0	32	0	2	742	5	0	0	0
coadread_mskresistance_2022	9	2975	12	10	6013	289	14	20	0
coadread_tcga	19	0	77	114	81697	2648	10	30	0
coadread_tcga_pan_can_atlas_2018	75	209	1127	2815	325236	0	2832	310	6
coadread_tcga_pub	19	215	78	213	91496	24	66	21	0
crc_apc_impact_2020	11	33	5	4	4519	2	19	0	0
crc_dd_2022	3	2	0	4	1812	0	2	0	0
crc_eo_2020	21	116	14	3	19980	1	63	0	0
crc_hta11_htan_2021	165	396	75	537	51340	67	411	34	0
crc_hta8_htan_2024	0	2	0	0	184	1	0	0	0
crc_msk_2017	19	74	10	20	17967	1	41	0	13
crc_nigerian_2020	1	0	3	1	1559	0	7	0	0
crc_orion_2024	0	3	6	8	1034	0	11	0	0
crc_sysucc_2022	73	0	86	1761	353984	2	798	10	162
cscc_dfarber_2015	0	0	0	11	2725	21	0	0	0
cscc_hgsc_bcm_2014	178	6219	38	243	100911	283	90	72	0
cscc_ucsf_2021	1209	0	0	144986	0	0	0	0	0
csf_msk_2024	48	84	1	4	3782	3	22	0	0
ctcl_columbia_2015	0	0	0	0	2470	0	3	0	0
desm_broad_2015	49	1	10	54	28105	77	22	13	0
difg_glass_2019	996753	3431	10827	60356	1303100	917	18998	8496	44
difg_glass	628556	2595	8850	37567	827457	784	15647	6917	22
difg_msk_2023	68	7	1	2	1113	1	2	0	0
dlbc_broad_2012	13	20	0	9	11607	4	1	1	0
dlbc_tcga	6	0	10	29	16316	484	2	11	60
dlbc_tcga_pan_can_atlas_2018	8	23	13	102	7566	0	70	2	0
dlbcl_dfci_2018	0	0	5	3	20212	99	9	0	0
dlbcl_duke_2017	0	12	17	0	7061	12	3	0	0
egc_msk_2017	2	11	4	0	1857	368	3	0	0
egc_msk_2023	5	66	6	4	7351	3	45	0	0
egc_msk_tp53_ccr_2022	0	25	2	2	2009	76	12	0	0
egc_mskcc_2020	3	30	3	0	3060	306	13	0	0
egc_tmucih_2015	0	0	29	12	13313	496	14	2	0
egc_trap_ccr_msk_2023	88	73	52	257	14136	9	85	3	0
egc_trap_msk_2020	34	23	32	51	6345	5	41	1	0
es_dfarber_broad_2014	165	3	9	16	14941	85	12	1	0
es_dsrct_msk_2023	12	4	1	1	314	1	1	0	0
es_iocurie_2014	25	0	2	53	1955	0	8	0	0
esca_broad	219	66	525	131	29441	10	440	191	0
esca_tcga	1	0	483	494	52464	4235	7	730	188
esca_tcga_pan_can_atlas_2018	13	96	291	960	45749	0	604	68	0
escc_icgc	5	0	2	10	7243	14	4	0	1
escc_ucla_2014	1	0	1	2	2973	50	2	3	0
gbc_msk_2018	7	4	0	0	746	61	1	0	0
gbc_mskcc_2022	14	26	0	0	1563	41	9	0	0
gbc_shanghai_2014	151	31	43	123	4841	4	45	27	0
gbm_columbia_2019	1	0	7	2	848	2	3	0	0
gbm_cptac_2021	9	0	0	6658	0	0	0	0	0
gbm_mayo_pdx_sarkaria_2019	7157	0	20753	8542	143033	950	11434	1522	2
gbm_tcga	12	0	18	55	20898	1066	5	19	0
gbm_tcga_pan_can_atlas_2018	10	40	55	452	68084	0	148	13	0
gbm_tcga_pub2013	2	10	18	19	15698	563	10	5	0
gbm_tcga_pub	0	0	0	0	416	36	0	0	0
gct_msk_2016	0	5	0	0	316	12	1	0	0
gct_msk_2020	0	36	1	0	251	0	2	0	1
gist_msk_2022	2	57	4	2	922	79	13	0	0
gist_msk_2023	0	52	5	1	921	0	13	0	0
glioma_msk_2018	58	0	0	0	2290	37	0	0	0
glioma_mskcc_2019	595	34	6	2	8035	217	16	0	0
hcc_clca_2024	38319	1103	1748	23404	215348	41	2445	810	5
hcc_inserm_fr_2015	159	0	2	83	27844	55	19	8	0
hcc_jcopo_msk_2023	53	7	2	1	357	0	5	0	0
hcc_meric_2021	0	0	7	36	24409	0	36	0	0
hcc_msk_2024	222	109	3	12	6411	1	42	0	0
hcc_msk_venturaa_2018	7	0	0	0	60	0	0	0	0
hcc_mskimpact_2018	67	16	0	3	506	10	3	0	0
hccihch_pku_2019	16	0	4	70	17430	0	22	2	0
heme_msk_impact_2022	24	340	18	40	12414	6	51	0	0
hgsoc_msk_2021	0	8	0	0	175	0	0	0	0
histiocytosis_cobi_msk_2019	0	130	6	1	269	8	4	0	1
hnc_mskcc_2016	37	49	1	0	1222	81	0	0	0
hnsc_broad	0	60	3	12	9481	44	3	0	0
hnsc_jhu	0	0	0	0	601	0	0	0	0
hnsc_mdanderson_2013	0	0	4	10	3365	88	1	3	0
hnsc_tcga	5	0	110	453	113253	5435	6	1118	22
hnsc_tcga_pan_can_atlas_2018	32	122	118	867	122933	0	274	29	0
hnsc_tcga_pub	25	433	20	319	51780	7	61	24	0
ihch_ismms_2015	4	0	0	2	210	0	1	0	0
ihch_msk_2021	18	16	2	1	1581	0	10	0	0
ihch_mskcc_2020	5	6	1	0	788	0	5	0	0
ihch_smmu_2014	4	0	24	37	9544	0	42	4	58
ilc_msk_2023	1	4	0	0	85	1	0	0	0
kich_tcga	2	0	6	24	6887	577	1	28	34
kich_tcga_pan_can_atlas_2018	0	3	3	20	3225	0	15	2	0
kich_tcga_pub	1	0	10	0	1663	104	3	6	0
kirc_bgi	0	0	0	1	518	13	0	0	0
kirc_tcga	88	0	366	142	34282	11556	7	548	23
kirc_tcga_pan_can_atlas_2018	9	142	62	218	30473	0	143	26	0
kirc_tcga_pub	257	1	424	328	32930	2795	723	267	0
kirp_tcga	3	0	22	25	16257	2434	3	11	123
kirp_tcga_pan_can_atlas_2018	4	188	111	313	33537	0	197	23	1
laml_tcga	48	1	5	9	2311	183	3	12	12
laml_tcga_pan_can_atlas_2018	21	13	38	38	10469	238	12	18	0
laml_tcga_pub	20	1	5	8	2309	174	3	12	0
lcll_broad_2013	0	2	2	7	3057	49	7	1	0
lgg_tcga	0	0	1	11	9223	647	0	3	0
lgg_tcga_pan_can_atlas_2018	4	30	39	227	38872	0	110	16	1
lgg_ucsf_2014	0	49	6	17	15025	49	6	3	0
lgggbm_tcga_pub	0	0	11	15	29597	1093	12	1	0
lgsoc_mapk_msk_2022	0	3	0	0	197	0	2	0	0
liad_inserm_fr_2014	0	0	1	9	1161	0	6	0	0
lihc_amc_prv	12	0	1	46	27454	48	4	15	0
lihc_riken	0	0	0	0	52	1	0	0	0
lihc_tcga	24	0	24	55	47631	5777	16	48	202
lihc_tcga_pan_can_atlas_2018	19	138	125	608	58999	0	239	17	0
luad_broad	37	1010	13	117	64490	24	41	33	2
luad_cas_2020	165	0	81	408	17153	0	101	9	0
luad_cptac_2020	0	0	5	0	29051	1726	860	259	62
luad_msk_npjpo_2021	10	115	2	4	3431	8	9	0	0
luad_mskcc_2015	4	0	0	12	9032	0	1	0	0
luad_mskcc_2020	16	139	3	5	4513	125	13	0	0
luad_mskcc_2023_met_organotropism	641	1972	278	1320	108919	50	593	53	2
luad_mskimpact_2021	0	37	2	0	984	0	7	0	0
luad_oncosg_2020	2969	0	616	750	68222	0	772	344	5
luad_tcga	32	1028	35	117	69016	2186	46	81	0
luad_tcga_pan_can_atlas_2018	71	535	161	1532	240333	0	514	78	5
luad_tcga_pub	32	1028	35	117	69032	2194	47	81	0
luad_tsp	1	13	1	1	985	15	0	1	0
lung_msk_2017	18	163	6	8	6693	277	16	0	0
lung_msk_mind_2020	10	80	0	2	2812	38	9	0	0
lung_msk_pdx	14	54	2	3	3830	0	11	0	0
lung_nci_2022	28	0	11	57	8661	1	26	2	0
lung_pdx_msk_2021	0	5	0	5	784	0	4	0	0
lung_smc_2016	2	0	0	1	4069	0	2	0	0
lusc_cptac_2021	44	516	18	173	34506	88	65	14	18
lusc_tcga	37	0	15	76	63883	1206	6	82	0
lusc_tcga_pan_can_atlas_2018	60	318	133	1376	196728	0	413	76	1
lusc_tcga_pub	3	956	11	89	70777	1163	6	13	0
lymphoma_cellline_msk_2020	2	0	3	1	1080	32	1	0	0
makeanimpact_ccr_2023	0	9	0	0	243	2	0	0	0
mbc_msk_2021	6	0	0	28	476	0	0	0	0
mbl_broad_2012	0	4	3	1	1761	33	3	3	0
mbl_dkfz_2017	50	6	3	11	2111	0	19	0	0
mbl_icgc	1	0	0	2	1056	0	0	0	0
mbl_pcgp	1	0	0	1	555	1	0	0	0
mbl_sickkids_2016	1	0	1	14	4577	184	0	2	0
mbn_mdacc_2013	432	0	1111	1510	41235	244	889	49	0
mbn_msk_2024	2	162	1	27	5485	2	32	0	0
mcl_idibips_2013	0	0	4	2	643	1	1	0	2
mds_iwg_2022	12	67	44	67	15464	0	31	0	0
mds_mskcc_2020	0	63	51	131	46528	4	39	0	45
mds_tokyo_2011	0	0	2	0	252	7	0	0	0
mel_dfci_2019	56	2921	241	218	130179	25	330	61	8
mel_mskimpact_2020	626	1021	3	17	17540	258	13	0	0
mel_tsam_liang_2017	310	2	1156	1018	28966	170	1283	117	0
mel_ucla_2016	54	2	0	136	26070	0	1	1	0
meso_tcga	1	0	11	85	5260	67	14	651	82
meso_tcga_pan_can_atlas_2018	0	13	4	62	3887	0	10	4	0
metastatic_solid_tumors_mich_2017	151	3026	252	245	80252	2423	577	144	0
mixed_allen_2018	67	10	423	741	165577	0	373	116	0
mixed_cfdna_msk_2020	47	3	8	0	1731	0	14	0	0
mixed_impact_subset_2022	6	7	1	0	414	12	1	0	0
mixed_kunga_msk_2022	2	5	1	1	257	70	1	0	0
mixed_msk_tcga_2021	0	0	3	7	2139	0	1	0	0
mixed_pipseq_2017	179	47	611	229	50039	46	1308	127	2
mm_broad	95	37	1	18	10987	1	1	2	0
mng_utoronto_2021	0	0	0	1534	0	0	0	0	0
mnm_washu_2016	13	0	8	10	730	35	3	2	0
mpcproject_broad_2021	145	0	258	183	17699	0	205	49	0
mpn_cimr_2013	5	0	2	7	1459	21	2	0	0
mpnst_mskcc	1123	0	84	104	3081	0	147	22	6
mrt_bcgsc_2016	6	0	7	25	797	0	9	7	0
msk_access_2021	93	179	1	4	7047	5	29	0	0
msk_ch_2020	34	21	15	4	10984	3	15	0	0
msk_ch_2023	134	102	207	46	23107	6111	361	1	5
msk_ch_ped_2021	0	1	0	0	39	0	0	0	0
msk_chord_2024	405	3173	224	104	200725	3176	736	1	0
msk_ctdna_vte_2024	154	231	16	22	10125	5	37	0	0
msk_impact_2017	1355	1428	64	40	71133	4055	187	1	0
msk_impact_50k_2026	6861	10125	407	414	459316	161	1811	1	0
msk_met_2021	2570	4779	184	142	216754	5303	686	1	0
msk_spectrum_tme_2022	0	2	0	0	284	0	2	0	0
mtnn_msk_2022	1	14	1	3	626	0	1	0	0
nbl_amc_2012	0	4	0	0	562	1	1	0	0
nbl_broad_2013	0	36	6	7	5204	28	5	5	0
nbl_target_2018_pub	132	0	0	14	889	0	0	0	0
nbl_ucologne_2015	2	8	1	2	895	12	0	0	0
nccrcc_genentech_2014	0	0	3	3	4627	65	7	3	0
nepc_wcm_2016	0	0	0	15	7348	0	0	0	0
nhl_bcgsc_2011	1	0	0	3	712	0	0	0	0
nhl_bcgsc_2013	37	0	0	34	9775	0	0	0	0
normal_skin_fibroblast_2024	51	632	1	72	2233	2	8	7	0
normal_skin_keratinocytes_2024	372	3100	5	744	21495	6	38	64	0
normal_skin_melanocytes_2024	2510	2951	18	2858	67868	50	141	84	0
npc_nusingapore	4	0	1	3	1565	2	0	0	0
nsclc_ctdx_msk_2022	30	290	15	0	9319	3	76	0	0
nsclc_mskcc_2015	0	0	0	7	4173	0	0	0	0
nsclc_mskcc_2018	8785	0	4989	995	39244	627	4705	1663	6
nsclc_pd1_msk_2018	10	53	0	3	2396	47	8	0	0
nsclc_tcga_broad_2016	0	6066	55	228	383568	3194	201	53	6
nsclc_tracerx_2017	2078	2462	708	2097	200977	81	493	122	0
nsclc_unito_2016	0	0	0	0	118	6	0	0	0
ntrk_msk_2019	10	6	0	0	379	45	0	0	0
odg_msk_2017	21	0	0	0	233	27	0	0	0
ov_tcga	9	199	8	28	19566	363	18	24	0
ov_tcga_pan_can_atlas_2018	13	102	128	403	52323	0	196	38	1
ov_tcga_pub	26	198	8	15	18776	360	16	21	0
paac_jhu_2014	3	3	4	11	2543	161	12	8	0
paac_msk_jco_2023	0	7	0	0	271	4	3	0	0
paad_cptac_2021	4	0	0	6323	0	0	0	0	0
paad_icgc	3	2	3	12	2595	8	4	0	0
paad_qcmg_uq_2016	3	82	61	105	22712	253	74	9	237
paad_tcga	0	0	2	29	30309	12	5	0	0
paad_tcga_pan_can_atlas_2018	4	15	31	196	31091	0	43	14	0
paad_utsw_2015	15	0	26	17	7036	112	41	12	0
pact_jhu_2011	0	0	1	2	441	0	0	0	0
paired_bladder_2022	1517	305	18	45	27159	129	91	0	0
pan_origimed_2020	751	453	428	446	96383	3	1428	2	1
pancan_mimsi_msk_2024	164	504	57	69	89400	12	248	0	0
pancan_pcawg_2020	6	4582	185	1599	375810	77	658	19	1
pancreas_msk_2024	0	25	2	0	1574	0	8	0	0
panet_arcnet_2017	0	10	6	146	2929	3	2	1	0
panet_jhu_2011	0	0	0	0	155	2	0	0	0
panet_msk_2018	0	3	0	4	911	0	2	1	0
panet_msk_erc_2023	0	2	0	1	678	0	2	0	0
panet_shanghai_2013	0	0	0	0	78	0	0	0	0
past_dkfz_heidelberg_2013	0	0	1	2	231	2	0	0	0
pcnsl_mayo_2015	0	0	0	5	1550	5	0	0	0
pcnsl_msk_2024	0	0	10	3	1417	0	3	0	0
pcpg_tcga	0	0	18	54	4202	180	13	195	0
pcpg_tcga_pan_can_atlas_2018	0	5	3	16	2629	0	12	1	0
pcpg_tcga_pub	0	15	1	8	3630	6	3	1	0
pdac_msk_2024	10	187	8	3	10130	215	50	0	0
pediatric_dkfz_2017	5	0	42	57	17536	290	50	9	0
plmeso_msk_2024	26	1	5	2	140	2	5	0	0
plmeso_nyu_2015	1	0	0	1	507	6	2	0	0
pog570_bcgsc_2020	4245395	0	69431	164504	3533913	2	82828	44961	104
pptc_2019	0	0	42	47	42611	157	34	9	0
prad_broad_2013	3	8	0	8	2682	41	5	8	0
prad_broad	0	13	3	4	5699	43	1	1	0
prad_cdk12_mskcc_2020	3	82	5	1	3776	209	21	0	0
prad_cpcg_2017	5	0	0	2	6145	0	0	0	0
prad_eururol_2017	204	1	6	386	50190	8	5	3	0
prad_fhcrc	101	49	61	252	31521	466	229	84	0
prad_mcspc_mskcc_2020	1	19	1	2	1827	1	15	0	0
prad_mich	0	2	1	2	3843	4	1	0	0
prad_msk_2019	0	0	0	0	46	3	0	0	0
prad_msk_mdanderson_2023	36015	0	3	14126	78861	0	74	2	675
prad_msk_stopsack_2021	3	123	8	5	8809	2	55	0	0
prad_mskcc_2017	2	23	1	0	1514	162	7	0	0
prad_mskcc_cheny1_organoids_2014	1	0	5	3	969	5	0	0	0
prad_mskcc	0	0	0	1	316	3	0	0	0
prad_organoids_msk_2022	1	64	2	80	13200	4	10	0	1
prad_p1000	4	293	3073	211	87135	312	4150	159	0
prad_pik3r1_msk_2021	2	101	8	1	4200	134	27	0	0
prad_su2c_2015	1122	0	1510	476	29987	3502	1131	335	523
prad_su2c_2019	425	0	2310	305	49388	11361	103	674	0
prad_tcga	1	0	76	208	38691	919	35	767	34
prad_tcga_pan_can_atlas_2018	2	37	40	194	33803	0	93	23	0
prad_tcga_pub	159	0	87	43	13407	36	100	20	193
prostate_dkfz_2018	490336	0	0	15199	505897	3	45	1	9
prostate_msk_2024	6	157	13	6	10600	2	61	0	0
prostate_pcbm_swiss_2019	81	0	88	198	26614	64	75	14	0
ptad_msk_2024	2	55	0	1	770	28	5	0	0
rbl_cfdna_msk_2020	5785	154	78	377	29027	17	450	52	0
rbl_mskcc_2020	1	2	4	0	267	0	4	0	0
rectal_msk_2019	2	17	6	0	2919	273	5	0	0
rectal_msk_2022	176	39	199	498	32680	3086	51	13	0
rms_msk_2023	0	0	1	0	20	1	0	0	0
rms_nih_2014	8	2	2	11	616	1	0	1	0
rt_target_2018_pub	0	0	0	2	119	0	0	0	1
sarc_mskcc	0	0	0	0	45	0	0	0	0
sarc_tcga	1	0	175	183	19421	191	117	222	66
sarc_tcga_pan_can_atlas_2018	6	59	72	578	30591	0	163	14	1
sarc_tcga_pub	2	0	66	103	12365	125	59	103	54
sarcoma_msk_2022	0	99	92	1776	9510	4	53	1	0
sarcoma_msk_2023	1	4	0	0	315	3	3	0	0
sarcoma_ucla_2024	6	10	0	4	446	0	1	0	0
scco_mskcc	0	0	0	0	19	0	0	0	0
sclc_cancercell_gardner_2017	1862	2	7561	3200	108801	627	4206	608	153
sclc_clcgp	0	155	5	3	8467	80	12	1	0
sclc_jhu	1	0	0	20	7953	1	2	0	0
sclc_uc_2024	90	476	11	315	27818	20	63	12	0
sft_sysucc_2023	24	28	0	4	1223	0	3	0	0
skcm_broad_brafresist_2012	26	871	45	77	43712	2773	46	68	0
skcm_broad	11453	4354	2126	2047	215481	208	2243	1341	2
skcm_broad_dfarber	15	268	1	23	8993	16	0	2	0
skcm_dfci_2015	6	3	0	153	54077	0	2	1	0
skcm_mskcc_2014	24	5	0	159	38349	0	6	0	0
skcm_tcga	22	0	62	870	321545	725	84	825	25
skcm_tcga_pan_can_atlas_2018	163	354	60	3581	552040	0	618	43	5
skcm_tcga_pub_2015	481	9616	26	761	278082	761	94	254	266
skcm_vanderbilt_mskcc_2015	7	0	0	0	766	49	0	0	0
skcm_yale	0	868	0	22	25236	41	1	1	0
soft_tissue_msk_2023	0	3	0	0	75	0	0	0	0
stad_oncosg_2018	0	6	64075	2763	223277	559000	34	12125	29
stad_pfizer_uhongkong	8	0	6	30	16152	1657	41	7	0
stad_tcga	0	0	816	563	191135	14434	955	1208	106
stad_tcga_pan_can_atlas_2018	39	178	580	1444	238161	0	1886	313	4
stad_tcga_pub	8	130	278	151	142396	5222	281	54	0
stad_uhongkong	13	0	173	17	5564	867	389	13	0
stad_utokyo	379	0	133	96	5554	68	340	46	0
stes_tcga_pub	1	0	1187	954	219859	17031	848	1753	265
summit_2018	20	9	2	0	869	142	0	0	0
tet_nci_2014	0	0	3	5	775	6	0	1	0
tgct_tcga	35	57	11	109	13904	93	26	382	55
tgct_tcga_pan_can_atlas_2018	2	8	3	48	3337	0	18	2	0
thca_tcga	5	36	8	10	7368	19	7	4	1
thca_tcga_pan_can_atlas_2018	1	8	13	88	11730	0	11	6	0
thca_tcga_pub	36	32	6	7	6669	15	6	1	0
thym_tcga	1	0	20	26	2792	116	18	32	59
thym_tcga_pan_can_atlas_2018	2	18	36	104	4657	0	93	9	0
thyroid_mskcc_2016	60	1	1	1	474	27	0	0	0
tmb_mskcc_2018	508	491	14	10	18458	1051	31	0	0
uccc_nih_2017	6	0	2	4	1677	1	7	3	0
ucec_ancestry_cds_msk_2023	54	135	11	5	14947	4	72	0	0
ucec_ccr_cfdna_msk_2022	1	0	0	8	588	0	0	0	0
ucec_cptac_2020	0	0	6	0	44734	5677	1289	263	94
ucec_msk_2018	1	20	0	2	2241	278	3	0	0
ucec_msk_2024	0	7	1	1	1512	45	2	0	0
ucec_tcga	252	0	86	358	183214	631	122	78	120
ucec_tcga_pan_can_atlas_2018	229	329	4877	14105	906669	0	8651	778	18
ucec_tcga_pub	252	0	86	357	183196	626	113	76	120
ucs_jhu_2014	6	0	37	50	18800	213	35	7	0
ucs_msk_2024	8	7	0	0	3803	1	6	0	0
ucs_tcga	0	0	18	49	10690	163	6	334	79
ucs_tcga_pan_can_atlas_2018	1	8	8	77	10282	0	28	4	1
um_qimr_2016	1	1	0	2	276	19	0	0	0
urcc_mskcc_2016	0	0	0	0	157	2	0	0	0
usarc_msk_2020	1	5	0	0	323	16	1	0	0
utuc_cornell_baylor_mdacc_2019	0	0	1	5	4122	2	2	0	0
utuc_igbmc_2021	3	0	3	6	4237	0	4	1	0
utuc_msk_2019	31	3	0	1	2141	97	0	0	0
utuc_mskcc_2015	9	3	0	0	1089	11	0	0	0
utuc_pdx_msk_2019	38	1	0	3	2082	0	4	0	0
uvm_tcga	0	0	0	1	2144	12	2	15	0
uvm_tcga_pan_can_atlas_2018	0	1	0	8	1923	0	3	0	0
vsc_cuk_2018	3	0	0	5	2996	25	3	4	1
wt_target_2018_pub	0	0	5	2	820	51	3	1	0
Total	6547928	116981	239683	595617	21993559	802994	211693	98452	5223

HGVSp Category Breakdown

Study	both_empty	delins_normalized	dup_vs_ins	fuzzy_fs	maf_empty	maf_nonstandard	match	mismatch	no_cds_data	position_shift	splice_no_protein	splice_vs_predicted	splice_vs_syn	transcript_model_change	vep_empty
acbc_mskcc_2015	0	0	0	2	0	0	240	1	0	0	0	1	0	0	10
acc_2019	183	1	1	196	21	0	9860	3	1	140	19	7	35	0	400
acc_tcga	15	0	1	141	26	0	19399	80	7	68	19	16	0	0	394
acc_tcga_pan_can_atlas_2018	818	0	0	58	57	912	9672	1	5	18	10	1	60	1	47
acyc_fmi_2014	0	0	0	3	0	0	25	0	0	0	1	0	0	0	0
acyc_jhu_2016	2	0	0	1	0	0	350	0	0	1	1	1	0	0	40
acyc_mda_2015	5	1	0	24	2	0	744	0	1	10	0	0	0	0	28
acyc_mgh_2016	0	0	0	0	4	0	1419	0	0	7	0	0	0	0	24
acyc_mskcc_2013	0	0	0	8	0	0	688	1	0	1	0	0	0	0	10
acyc_sanger_2013	0	0	0	5	1	0	293	0	0	1	0	1	1	0	8
all_phase2_target_2018_pub	0	0	0	3	4	0	746	1	0	2	1	0	0	0	7
all_stjude_2013	17	0	0	13	0	0	475	0	0	6	2	0	3	0	219
all_stjude_2015	0	0	0	0	0	0	80	0	0	0	0	0	0	0	0
all_stjude_2016	36	0	0	22	0	0	783	0	0	14	1	0	0	0	415
aml_ohsu_2018	0	0	12	289	0	0	9523	5	4	62	11	3	0	0	1
aml_ohsu_2022	4	0	7	466	42	64	11299	2	4	62	8	4	0	0	5
aml_stjude_2024	2	2	0	131	11	5	1490	0	0	41	2	2	1	0	11
aml_target_2018_pub	0	0	0	3	1	0	548	0	0	1	0	0	0	0	4
ampca_bcm_2016	17	0	6	562	26	0	27501	35	2	28	4	8	0	0	559
angs_painter_2025	291	0	0	10	129	1681	16055	0	7	35	2	2	112	0	490
angs_project_painter_2018	6	0	0	0	54	0	23563	0	0	40	0	0	0	0	395
appendiceal_msk_2022	2	0	1	23	0	1	1044	0	0	6	4	3	0	0	0
asclc_msk_2024	0	0	0	7	0	1	231	0	0	1	0	0	0	0	0
bcc_unige_2016	200	259	2	123	366	0	224199	199	124	291	15	95	1781	0	6799
bfn_duke_nus_2015	0	0	0	7	0	0	399	0	0	1	3	0	0	0	7
biliary_tract_summit_2022	1	0	0	4	0	0	183	0	0	4	0	0	0	0	0
bladder_columbia_msk_2018	111	0	0	79	12	9	3342	0	0	64	4	0	0	0	8
bladder_msk_2023	378	5	0	273	2	2	6292	0	0	24	13	6	0	2	3
blca_bcan_hcrn_2022	305	1	0	39	5	0	5211	0	0	38	7	1	0	0	0
blca_bgi	1	0	0	64	13	0	10972	6	0	42	10	6	0	0	125
blca_cornell_2016	78	0	0	0	53	0	18015	0	11	28	4	0	133	0	1070
blca_dfarber_mskcc_2014	175	1	2	171	15	0	15808	7	13	48	5	1	0	0	5119
blca_msk_2024	151	2	0	46	18	16	3510	0	3	19	17	6	22	1	8
blca_msk_tcga_2020	1045	5	1	418	115	3177	115799	3	34	268	60	24	59	1	12873
blca_mskcc_solit_2012	0	0	0	1	0	0	99	0	0	0	1	0	0	0	2
blca_mskcc_solit_2014	7	0	0	31	1	0	1131	1	0	3	0	1	0	0	2
blca_nmibc_2017	79	0	0	48	0	0	1467	3	0	5	3	3	0	0	1
blca_pdx_msk_2025	76	0	2	26	8	10	2370	0	0	20	10	0	20	0	8
blca_plasmacytoid_mskcc_2016	12	0	0	8	0	0	428	0	0	1	3	0	0	0	11
blca_tcga	17	0	3	158	40	0	38550	43	12	57	23	19	0	0	390
blca_tcga_pan_can_atlas_2018	6586	4	1	329	527	9732	134903	2	42	249	65	22	780	2	1458
blca_tcga_pub_2017	29	0	2	361	135	0	128451	14	0	219	48	25	0	0	2376
blca_tcga_pub	12	1	2	146	41	0	38599	36	12	57	21	17	0	0	382
bm_nsclc_mskcc_2023	6	7	1	38	6	6	4212	1	0	19	8	6	0	0	2
bowel_colitis_msk_2022	8	0	0	16	6	7	1822	1	0	26	6	1	0	0	3
braf_msk_impact_2024	18	0	0	24	0	3	744	0	0	4	1	0	0	0	0
brain_cptac_2020	217	0	0	48	104	578	8215	0	2	32	79	0	35	3	638
brca_bccrc	2	0	0	6	2	0	2362	0	0	7	0	3	0	0	15
brca_bccrc_xenograft_2014	2247	0	0	0	40	0	9970	0	3	17	35	0	0	0	6377
brca_broad	3	0	1	53	4	0	4794	5	0	12	4	0	0	0	109
brca_cptac_2020	860	0	0	74	122	0	27907	0	0	48	1	6	0	0	0
brca_dfci_2020	498	0	0	44	70	1248	11625	0	4	21	10	3	58	0	32
brca_dldccc_2022	143	0	2	23	317	717	23232	0	2	44	8	0	11	0	12
brca_fuscc_2020	1	0	0	4	0	5	614	0	0	1	0	0	0	0	0
brca_hta9_htan_2022	132	1	0	0	19	900	983	0	1	2	3	1	15	0	46
brca_igr_2015	57	0	1	285	33	0	20478	2	9	167	6	0	0	0	1911
brca_jup_msk_2020	0	0	0	0	0	0	104	0	0	0	0	0	0	0	0
brca_mapk_hp_msk_2021	1	0	0	22	0	0	602	1	0	6	4	1	0	0	0
brca_mbcproject_2022	1400	0	2	405	449	7936	43149	0	28	167	27	14	240	0	2154
brca_mbcproject_wagle_2017	0	0	2	88	82	0	23339	1	0	56	8	11	0	0	440
brca_metabric	0	0	0	130	0	0	16951	1	0	66	97	13	0	0	14
brca_mskcc_2019	0	0	0	15	1	0	635	4	0	2	1	0	0	0	0
brca_pareja_msk_2020	2	0	0	5	11	32	3621	0	0	7	9	6	0	0	1
brca_sanger	7	0	0	20	9	0	6828	0	1	22	10	3	33	0	306
brca_smc_2018	2	0	0	25	2	15	6770	0	3	50	15	2	0	0	1
brca_tcga	216	0	3	1287	120	0	82398	80	35	161	60	20	0	0	6110
brca_tcga_pan_can_atlas_2018	9870	4	2	604	445	9083	108562	0	61	236	114	48	587	7	872
brca_tcga_pub2015	1	11	4	1009	28	0	68408	110	27	205	56	31	0	0	78
brca_tcga_pub	320	1	3	195	35	0	30179	30	3	67	60	19	0	0	3078
breast_alpelisib_2020	0	0	0	26	0	0	799	3	0	1	0	1	1	0	2
breast_ink4_msk_2021	6	2	0	322	8	0	7708	2	0	59	42	23	0	1	9
breast_msk_2018	9	6	2	176	4	0	8929	11	0	66	59	28	0	0	24
ccle_broad_2019	467	448	64	12773	9687	0	1161879	98	8	3563	986	364	9036	0	12885
ccle_genentech_2014	567	0	0	0	1311	2653	260533	0	7	193	6	0	8	0	97
ccrcc_dfci_2019	10	0	0	28	10	0	3558	0	0	41	54	4	13	0	428
ccrcc_irc_2014	2	0	0	27	0	0	3373	0	0	8	9	4	0	0	21
ccrcc_sjuh_2023	0	0	11	249	0	12	1075	0	0	117	0	0	0	0	12
ccrcc_utokyo_2013	35934	0	0	79	6	0	5388	0	1	11	3	1	0	0	34682
cellline_ccle_broad	13801	20	12	939	101	12473	62730	0	0	765	120	11	74	7	364
cellline_nci60	204	0	2	44	20	0	38945	0	0	83	13	1	0	0	34838
cervix_msk_2023	1	0	0	13	0	1	1048	0	0	4	2	1	0	0	1
cesc_tcga	404	0	1	131	118	0	38755	26	2	28	19	0	0	0	7063
cesc_tcga_pan_can_atlas_2018	15774	2	0	177	394	8865	74203	0	31	122	37	7	435	1	738
cfdna_msk_2019	0	2	0	77	3	0	3766	8	0	10	0	0	0	0	23
chl_sccc_2023	15	0	0	40	58	124	6507	0	0	18	19	7	0	14	10
chol_icgc_2017	7	0	0	99	15	62	4899	0	0	14	5	4	0	1	1
chol_jhu_2013	1	0	0	2	3	0	1860	0	1	8	0	0	11	0	94
chol_msk_2018	6	1	0	22	0	0	727	1	0	1	6	3	0	0	0
chol_nccs_2013	0	0	0	1	0	0	238	0	0	0	0	0	0	0	4
chol_nus_2012	0	0	0	5	0	0	188	0	0	2	0	0	1	0	9
chol_tcga	44	0	0	18	12	0	5739	6	0	12	8	7	0	0	909
chol_tcga_pan_can_atlas_2018	896	0	0	15	12	436	3064	0	3	12	7	3	19	0	33
cll_broad_2015	3	0	2	484	6	0	0	11	0	11989	1	0	0	0	118
cll_broad_2022	50	0	0	140	130	119	39587	0	0	61	17	6	284	0	7
cll_iuopa_2015	350	1	0	17	17	0	9359	0	0	23	4	3	71	0	3786
cllsll_icgc_2011	0	0	0	3	1	0	1086	0	0	2	0	0	1	0	17
coad_caseccc_2015	1	0	0	6	2	0	2645	0	1	3	3	0	0	0	35
coad_cptac_2019	148	0	3	1017	130	0	70220	11	29	224	21	7	406	0	1617
coad_silu_2022	242	0	7	2441	800	1018	135106	0	28	365	80	17	1	2	20
coadread_cass_2020	139	4	30	731	445	326	36642	8	14	6176	308	5515	0	20	57
coadread_dfci_2016	1400	0	9	2090	276	0	278635	120	80	291	74	11	0	0	48437
coadread_genentech	8	0	0	5	23	0	35798	0	10	47	10	0	0	0	370
coadread_mskcc	0	0	0	26	2	0	725	0	0	22	2	0	0	0	4
coadread_mskresistance_2022	9	30	0	47	10	149	8363	0	0	53	30	31	555	29	36
coadread_tcga	41	0	0	481	92	0	81837	39	37	63	6	5	0	0	1994
coadread_tcga_pan_can_atlas_2018	26277	1	2	2248	996	22297	277247	0	126	510	103	39	1665	2	1097
coadread_tcga_pub	217	6	0	479	186	1434	88676	0	37	74	4	5	533	3	478
crc_apc_impact_2020	12	1	2	138	3	5	4393	1	0	21	6	7	0	0	4
crc_dd_2022	3	0	0	37	4	0	1775	0	0	2	0	0	0	0	2
crc_eo_2020	21	5	2	604	3	14	19410	0	0	80	33	18	0	1	7
crc_hta11_htan_2021	534	12	0	1317	381	1886	47864	3	28	494	14	230	200	32	30
crc_hta8_htan_2024	0	0	0	6	0	0	180	0	0	1	0	0	0	0	0
crc_msk_2017	19	4	2	116	19	16	17826	1	1	63	20	8	0	0	50
crc_nigerian_2020	1	0	0	52	1	3	1503	0	0	10	1	0	0	0	0
crc_orion_2024	2	0	0	36	9	21	933	0	0	7	2	0	1	0	51
crc_sysucc_2022	356	0	2	3557	1707	2484	346751	1	149	1255	290	31	8	3	282
cscc_dfarber_2015	5	0	0	3	6	0	2640	4	0	6	2	0	18	0	73
cscc_hgsc_bcm_2014	261	244	4	128	160	0	100415	3	50	127	23	65	8	0	6546
cscc_ucsf_2021	46914	0	0	128	4467	0	55962	30538	0	7740	0	0	0	57	389
csf_msk_2024	48	6	0	46	4	5	3777	0	0	34	10	11	0	0	3
ctcl_columbia_2015	0	0	0	3	0	14	2449	0	0	4	0	2	0	0	1
desm_broad_2015	67	0	2	58	36	0	26849	8	7	51	5	0	0	0	1248
difg_glass_2019	1098386	16	0	72	1002	1154892	138597	2	99	325	276	19	1340	2	7894
difg_glass	694986	12	1	262	999	722360	103289	1	77	274	202	17	958	6	4951
difg_msk_2023	68	0	0	14	2	1	1097	0	0	5	0	2	1	0	4
dlbc_broad_2012	18	3	0	0	4	0	11323	0	3	14	4	2	86	0	198
dlbc_tcga	11	0	2	48	24	0	16452	28	0	22	6	8	0	0	317
dlbc_tcga_pan_can_atlas_2018	542	0	0	27	29	689	6336	0	10	69	7	3	41	0	31
dlbcl_dfci_2018	0	0	3	132	3	0	20047	0	0	58	3	2	0	0	80
dlbcl_duke_2017	0	0	2	99	0	0	6779	0	0	48	0	2	0	0	175
egc_msk_2017	2	2	0	11	0	0	2198	3	0	2	11	12	0	0	4
egc_msk_2023	5	2	0	178	4	3	7192	0	0	39	27	21	0	1	8
egc_msk_tp53_ccr_2022	0	0	0	48	2	3	2049	1	0	10	5	7	0	1	0
egc_mskcc_2020	3	0	0	71	0	0	3297	1	0	11	11	17	0	0	4
egc_tmucih_2015	3	0	5	155	9	0	13486	3	2	26	5	2	0	0	170
egc_trap_ccr_msk_2023	643	6	1	58	77	1914	11492	0	3	32	15	4	69	3	386
egc_trap_msk_2020	225	3	0	30	7	717	5300	0	2	17	4	1	30	1	195
es_dfarber_broad_2014	166	0	2	72	15	0	14837	3	0	43	3	3	2	0	86
es_dsrct_msk_2023	13	0	0	14	0	0	302	0	0	2	1	1	0	0	1
es_iocurie_2014	78	0	1	12	0	0	1154	0	0	11	2	0	0	0	785
esca_broad	328	4	1	110	22	4933	25133	0	6	54	8	2	149	1	272
esca_tcga	386	0	1	378	109	0	49368	52	1	78	35	4	0	0	8190
esca_tcga_pan_can_atlas_2018	8445	1	1	226	194	4310	34077	0	26	99	19	9	192	3	179
escc_icgc	11	0	0	14	4	0	7120	0	2	16	5	0	0	0	107
escc_ucla_2014	10	0	0	22	1	0	2942	0	0	8	0	0	0	0	49
gbc_msk_2018	7	0	0	29	0	0	774	2	0	6	0	1	0	0	0
gbc_mskcc_2022	14	1	0	60	0	2	1560	1	0	6	7	1	0	0	1
gbc_shanghai_2014	272	0	1	4	2	0	1947	0	0	10	3	0	15	0	3011
gbm_columbia_2019	2	0	0	1	1	5	778	0	0	2	0	0	5	0	69
gbm_cptac_2021	0	0	0	54	0	0	4635	1606	7	224	1	5	0	1	134
gbm_mayo_pdx_sarkaria_2019	15494	0	8	350	208	0	48687	85	27	537	126	8	381	0	127482
gbm_tcga	49	0	2	127	18	0	21132	27	13	36	24	10	0	0	635
gbm_tcga_pan_can_atlas_2018	3571	1	1	217	209	4000	59985	0	29	133	16	11	380	0	249
gbm_tcga_pub2013	14	0	2	124	9	112	15843	15	8	29	9	8	49	0	103
gbm_tcga_pub	0	0	0	1	0	0	440	0	0	0	1	0	1	0	9
gct_msk_2016	0	0	0	2	0	0	325	1	0	1	0	2	0	0	3
gct_msk_2020	0	1	0	2	0	0	262	0	0	5	4	10	1	0	6
gist_msk_2022	2	3	2	10	2	1	975	30	0	40	13	0	0	0	1
gist_msk_2023	0	2	2	8	1	2	899	0	0	65	12	0	0	0	1
glioma_msk_2018	60	0	0	0	2325	0	0	0	0	0	0	0	0	0	0
glioma_mskcc_2019	596	1	1	93	1	0	8133	5	0	55	11	7	0	0	2
hcc_clca_2024	115671	21	3	382	322	106026	59850	0	8	206	166	33	5	8	522
hcc_inserm_fr_2015	181	0	0	37	61	0	27229	0	8	89	8	7	0	0	550
hcc_jcopo_msk_2023	53	0	0	3	1	0	359	0	0	4	2	0	0	0	3
hcc_meric_2021	202	0	0	33	42	0	24141	0	1	59	9	1	0	0	0
hcc_msk_2024	226	4	0	189	8	9	6275	0	0	31	39	12	0	2	5
hcc_msk_venturaa_2018	7	0	0	0	0	0	59	0	0	1	0	0	0	0	0
hcc_mskimpact_2018	69	1	0	5	1	0	521	1	0	2	4	1	0	0	0
hccihch_pku_2019	59	0	0	23	58	313	16928	0	3	34	8	2	102	1	13
heme_msk_impact_2022	25	12	1	430	39	9	12214	0	0	68	53	23	0	12	7
hgsoc_msk_2021	0	0	0	3	0	0	175	0	0	3	2	0	0	0	0
histiocytosis_cobi_msk_2019	1	1	1	9	0	3	324	2	0	19	7	28	6	3	15
hnc_mskcc_2016	37	3	0	16	0	0	1328	1	0	1	2	1	0	0	1
hnsc_broad	8	3	0	13	7	0	9333	4	3	53	0	0	65	0	114
hnsc_jhu	0	0	0	0	0	7	594	0	0	0	0	0	0	0	0
hnsc_mdanderson_2013	2	0	0	26	8	0	3344	18	1	16	1	0	0	0	55
hnsc_tcga	315	0	20	682	143	0	112590	123	42	218	81	27	0	0	6161
hnsc_tcga_pan_can_atlas_2018	5583	2	0	421	417	7448	108719	0	56	249	40	12	659	0	769
hnsc_tcga_pub	132	28	0	235	257	951	50576	0	26	100	36	6	298	0	24
ihch_ismms_2015	9	0	0	0	0	7	198	0	0	1	0	0	2	0	0
ihch_msk_2021	19	0	1	48	0	2	1531	0	0	12	10	4	0	0	1
ihch_mskcc_2020	6	0	1	19	0	1	763	0	0	6	5	1	0	0	3
ihch_smmu_2014	40	0	1	44	35	465	8922	0	0	60	6	1	67	3	69
ilc_msk_2023	1	0	0	4	0	0	86	0	0	0	0	0	0	0	0
kich_tcga	20	0	1	135	6	0	7068	14	1	17	4	2	0	0	291
kich_tcga_pan_can_atlas_2018	219	0	0	16	6	231	2756	0	0	5	0	0	21	0	14
kich_tcga_pub	1	0	2	20	0	0	1698	2	0	8	1	0	15	0	40
kirc_bgi	1	0	0	0	0	0	527	0	0	1	0	0	0	0	3
kirc_tcga	192	0	26	4385	38	0	39694	106	16	139	51	39	0	0	2326
kirc_tcga_pan_can_atlas_2018	1942	2	0	235	89	2031	26239	0	16	87	32	13	183	0	204
kirc_tcga_pub	554	0	5	412	31	0	27827	90	11	87	35	27	0	0	8646
kirp_tcga	11	0	4	270	17	0	18121	55	0	33	5	26	0	0	336
kirp_tcga_pan_can_atlas_2018	2450	1	1	261	130	2692	28233	0	10	103	30	12	210	4	237
laml_tcga	54	0	1	86	3	0	2217	1	4	5	4	0	0	0	209
laml_tcga_pan_can_atlas_2018	47	0	3	270	12	0	9314	1	8	44	11	3	0	0	1134
laml_tcga_pub	26	0	1	85	2	0	2210	0	4	5	3	0	0	0	196
lcll_broad_2013	4	1	0	20	3	0	2996	3	3	35	1	0	20	0	39
lgg_tcga	3	0	0	48	8	0	9673	8	4	14	2	3	0	0	122
lgg_tcga_pan_can_atlas_2018	1598	1	0	170	109	1934	35044	0	21	69	15	10	214	0	114
lgg_ucsf_2014	3	2	0	13	14	0	14872	0	8	24	18	12	0	0	189
lgggbm_tcga_pub	0	0	2	139	15	0	30450	22	0	45	13	13	0	0	30
lgsoc_mapk_msk_2022	0	0	0	2	0	0	195	0	0	2	3	0	0	0	0
liad_inserm_fr_2014	4	0	1	1	8	23	1121	0	0	7	0	2	7	0	3
lihc_amc_prv	18	0	0	15	40	0	26866	14	0	51	9	1	0	0	566
lihc_riken	0	0	0	0	0	0	53	0	0	0	0	0	0	0	0
lihc_tcga	40	0	1	385	39	0	52199	68	2	121	19	51	0	0	852
lihc_tcga_pan_can_atlas_2018	5176	2	0	224	213	4921	48736	0	22	156	53	32	322	2	286
luad_broad	82	53	1	229	72	1176	63538	0	44	106	41	23	359	2	41
luad_cas_2020	896	0	9	89	169	1753	14738	0	12	85	15	27	68	6	50
luad_cptac_2020	0	0	0	145	0	1	23798	203	23	7290	7	10	0	20	466
luad_msk_npjpo_2021	10	8	0	38	4	10	3455	0	0	20	7	7	0	1	19
luad_mskcc_2015	9	0	0	0	7	0	8826	0	2	12	8	0	0	0	185
luad_mskcc_2020	16	9	0	45	5	0	4650	17	0	18	13	8	0	0	33
luad_mskcc_2023_met_organotropism	3385	98	3	519	516	13677	93627	1	70	316	107	67	384	9	1049
luad_mskimpact_2021	0	0	0	12	0	1	1000	0	0	12	4	0	0	0	1
luad_oncosg_2020	3602	0	0	114	118	26650	40518	0	42	156	77	6	222	0	2173
luad_tcga	85	53	2	530	64	0	70063	31	50	108	53	33	1	0	1468
luad_tcga_pan_can_atlas_2018	9819	5	1	683	705	13838	215038	0	163	433	95	21	1212	1	1215
luad_tcga_pub	85	53	2	531	64	0	70087	31	49	108	53	33	1	0	1469
luad_tsp	4	1	0	6	1	0	982	1	0	8	3	2	0	0	9
lung_msk_2017	19	13	0	60	7	0	6985	33	0	31	13	15	0	0	5
lung_msk_mind_2020	11	8	0	20	1	2	2875	5	0	14	7	3	0	0	5
lung_msk_pdx	16	4	0	32	1	4	3806	0	0	24	16	3	6	1	1
lung_nci_2022	89	0	0	51	42	236	8300	1	4	43	11	3	0	1	5
lung_pdx_msk_2021	0	0	0	17	5	1	769	0	0	3	2	1	0	0	0
lung_smc_2016	11	0	0	0	0	99	3960	0	0	2	0	0	0	0	2
lusc_cptac_2021	95	30	3	174	150	382	34164	62	5	102	5	18	212	0	40
lusc_tcga	57	0	2	73	56	0	63988	10	40	107	17	1	0	0	954
lusc_tcga_pan_can_atlas_2018	8709	1	1	467	608	12014	174486	0	94	360	76	23	1114	4	1148
lusc_tcga_pub	17	52	2	68	75	0	72057	10	41	85	14	18	2	0	577
lymphoma_cellline_msk_2020	2	0	0	3	1	0	1098	6	0	7	0	1	0	0	1
makeanimpact_ccr_2023	0	0	0	4	0	0	247	0	0	3	0	0	0	0	0
mbc_msk_2021	3	0	0	4	2	7	484	0	1	2	2	2	0	0	3
mbl_broad_2012	6	0	2	13	1	0	1669	2	1	102	1	0	4	0	7
mbl_dkfz_2017	51	0	0	31	10	49	2033	0	0	15	2	3	0	0	6
mbl_icgc	1	0	0	2	2	0	1043	0	0	2	0	0	0	0	9
mbl_pcgp	1	0	0	4	1	0	514	0	0	2	1	0	0	0	35
mbl_sickkids_2016	26	0	0	23	13	0	4543	1	0	7	1	3	4	0	158
mbn_mdacc_2013	1918	0	16	77	24	0	14965	3	0	65	44	5	81	0	28272
mbn_msk_2024	4	4	1	98	25	5	5484	0	0	27	34	19	0	8	2
mcl_idibips_2013	0	0	0	0	2	11	611	0	0	7	0	0	3	0	19
mds_iwg_2022	21	9	4	1223	58	99	14114	7	0	67	2	6	4	1	70
mds_mskcc_2020	21	2	15	1371	110	1385	43300	2	3	284	241	6	15	1	105
mds_tokyo_2011	0	0	0	5	0	0	256	0	0	0	0	0	0	0	0
mel_dfci_2019	217	105	1	86	193	2006	129832	0	0	196	130	29	1114	1	129
mel_mskimpact_2020	627	19	0	49	16	9	18657	6	0	27	23	21	5	0	19
mel_tsam_liang_2017	1276	2	2	36	53	0	10985	14	6	40	23	1	0	0	20584
mel_ucla_2016	149	0	0	0	115	680	25233	0	28	30	13	0	1	1	14
meso_tcga	76	0	1	21	10	0	4432	3	4	22	2	0	0	0	1600
meso_tcga_pan_can_atlas_2018	234	0	1	16	19	384	3276	0	4	7	1	1	19	1	17
metastatic_solid_tumors_mich_2017	249	22	22	812	147	0	81800	63	40	1053	201	306	10	0	2345
mixed_allen_2018	545	0	3	173	649	4140	160021	0	1	224	29	4	1332	1	185
mixed_cfdna_msk_2020	47	0	2	44	1	1	1680	0	0	13	6	3	0	0	6
mixed_impact_subset_2022	6	1	0	7	0	3	416	0	0	5	0	0	0	0	3
mixed_kunga_msk_2022	3	0	0	4	2	0	278	14	0	2	2	12	0	0	20
mixed_msk_tcga_2021	4	0	0	15	6	8	2022	0	0	0	0	0	13	0	82
mixed_pipseq_2017	375	3	19	129	33	0	45508	3	38	468	28	0	0	0	5984
mm_broad	106	5	0	1	7	0	10705	0	4	15	4	0	0	0	295
mng_utoronto_2021	72	0	0	15	4	0	1437	3	0	0	2	1	0	0	0
mnm_washu_2016	22	0	0	30	1	0	492	0	0	1	3	0	1	0	251
mpcproject_broad_2021	653	0	0	147	84	4972	11981	0	5	56	16	1	84	0	540
mpn_cimr_2013	7	0	0	19	5	0	1339	0	0	4	0	0	9	0	113
mpnst_mskcc	1827	0	0	9	1	1822	835	0	0	13	1	2	2	0	55
mrt_bcgsc_2016	29	0	0	2	2	0	302	0	0	1	0	0	0	0	515
msk_access_2021	96	7	0	177	1	4	6964	0	0	76	10	15	0	6	2
msk_ch_2020	34	1	0	297	4	13	10657	1	0	44	14	7	0	2	2
msk_ch_2023	6257	6	0	2145	29	0	18691	150	5	2674	42	59	0	1	15
msk_ch_ped_2021	0	0	0	0	0	0	40	0	0	0	0	0	0	0	0
msk_chord_2024	433	155	9	5366	84	198	199846	84	0	1095	695	324	4	41	210
msk_ctdna_vte_2024	161	11	1	265	15	5	9980	0	0	106	23	18	0	1	4
msk_impact_2017	1360	66	11	1492	35	0	74496	123	0	279	204	144	0	0	53
msk_impact_50k_2026	6930	337	31	9981	363	466	455838	4	0	2415	1496	742	14	80	399
msk_met_2021	2599	171	12	4688	114	171	220142	149	0	1040	692	371	5	48	217
msk_spectrum_tme_2022	0	0	0	2	0	5	263	0	0	8	3	0	1	0	6
mtnn_msk_2022	1	0	0	23	3	3	609	0	0	4	2	0	0	0	1
nbl_amc_2012	0	0	0	2	0	0	559	0	0	3	0	0	0	0	4
nbl_broad_2013	1	3	0	65	6	0	4903	0	1	219	3	0	30	0	60
nbl_target_2018_pub	146	0	0	0	0	0	271	0	0	0	2	0	0	0	616
nbl_ucologne_2015	2	0	0	4	2	0	876	0	1	9	0	1	0	0	25
nccrcc_genentech_2014	12	0	0	80	1	0	4569	0	2	23	6	0	0	0	15
nepc_wcm_2016	11	0	0	0	15	0	7223	0	0	13	1	0	51	0	49
nhl_bcgsc_2011	2	0	0	0	2	0	671	0	0	9	0	0	0	0	32
nhl_bcgsc_2013	108	0	0	0	18	735	8923	0	4	15	0	0	30	0	13
normal_skin_fibroblast_2024	199	21	0	0	27	536	2114	0	2	4	1	5	8	0	89
normal_skin_keratinocytes_2024	3043	89	0	14	220	5509	16145	0	7	31	1	25	106	0	634
normal_skin_melanocytes_2024	15615	73	0	9	263	25605	32829	0	32	77	24	24	239	0	1690
npc_nusingapore	4	0	0	2	3	0	1548	0	0	4	0	0	0	0	14
nsclc_ctdx_msk_2022	30	14	1	80	0	27	9339	0	0	130	44	37	0	1	30
nsclc_mskcc_2015	2	0	0	0	5	0	4086	0	1	4	3	0	0	0	79
nsclc_mskcc_2018	9699	0	0	136	83	0	25781	11	14	75	28	3	156	0	25028
nsclc_pd1_msk_2018	12	4	0	16	1	0	2444	7	0	13	7	5	0	0	8
nsclc_tcga_broad_2016	36	322	5	1352	193	0	388266	39	203	438	107	147	6	0	2257
nsclc_tracerx_2017	3818	71	0	397	370	28123	113526	5	79	277	68	24	678	0	61582
nsclc_unito_2016	0	0	0	0	0	0	124	0	0	0	0	0	0	0	0
ntrk_msk_2019	10	0	0	7	0	0	416	1	0	2	1	0	0	0	3
odg_msk_2017	21	0	0	6	0	0	252	1	0	1	0	0	0	0	0
ov_tcga	15	12	0	79	22	0	19567	8	7	44	29	7	0	0	425
ov_tcga_pan_can_atlas_2018	3138	3	0	845	200	3358	44929	0	17	114	80	25	264	5	226
ov_tcga_pub	32	14	0	76	9	0	18541	5	7	45	28	7	0	0	656
paac_jhu_2014	11	0	0	6	3	0	2520	1	0	4	1	0	0	0	199
paac_msk_jco_2023	0	0	0	4	0	0	275	0	0	2	4	0	0	0	0
paad_cptac_2021	9	0	0	88	6	0	4411	1426	4	225	2	2	0	0	154
paad_icgc	6	1	1	12	9	0	2493	0	1	13	2	0	0	0	89
paad_qcmg_uq_2016	42	3	2	137	66	0	20902	4	5	63	36	13	0	0	2263
paad_tcga	2	0	0	25	27	0	30003	0	14	34	9	2	0	0	241
paad_tcga_pan_can_atlas_2018	1586	0	0	85	92	1885	27384	0	22	40	16	4	170	1	109
paad_utsw_2015	21	0	3	82	11	0	6784	3	2	22	5	8	0	0	318
pact_jhu_2011	0	0	0	0	2	0	408	0	0	0	1	0	0	0	33
paired_bladder_2022	1543	17	2	640	19	19	26744	7	0	114	84	31	0	9	35
pan_origimed_2020	829	2	3	1643	406	5331	85708	0	0	413	136	81	446	9	4888
pancan_mimsi_msk_2024	173	13	3	2493	61	93	86965	0	0	368	148	71	1	6	59
pancan_pcawg_2020	575	205	12	1925	1331	4087	370669	3	0	839	508	183	2487	38	75
pancreas_msk_2024	0	1	0	52	0	1	1534	0	0	11	6	4	0	0	0
panet_arcnet_2017	16	0	1	14	130	0	2610	0	2	9	13	0	0	0	302
panet_jhu_2011	0	0	0	0	0	0	153	0	0	0	0	0	0	0	4
panet_msk_2018	0	0	0	7	4	9	887	0	0	5	2	0	2	0	5
panet_msk_erc_2023	0	0	0	1	1	0	670	0	0	4	4	0	1	0	2
panet_shanghai_2013	0	0	0	0	0	0	78	0	0	0	0	0	0	0	0
past_dkfz_heidelberg_2013	2	0	1	1	0	0	230	0	0	0	0	0	0	0	2
pcnsl_mayo_2015	2	0	0	7	3	0	1520	2	2	6	0	0	0	0	18
pcnsl_msk_2024	0	0	0	24	3	0	1393	0	0	12	0	1	0	0	0
pcpg_tcga	41	0	0	30	13	0	3730	19	1	22	16	1	0	0	789
pcpg_tcga_pan_can_atlas_2018	114	0	0	9	7	151	2349	0	1	7	1	1	9	0	17
pcpg_tcga_pub	3	1	0	11	5	0	3400	0	2	9	1	1	12	0	219
pdac_msk_2024	11	4	1	305	3	6	10150	0	0	49	43	22	0	6	3
pediatric_dkfz_2017	10	0	1	200	52	613	16806	5	19	97	17	5	128	2	34
plmeso_msk_2024	30	0	0	3	0	82	64	0	0	0	1	0	0	0	1
plmeso_nyu_2015	1	0	0	1	1	0	497	0	1	3	1	0	0	0	12
pog570_bcgsc_2020	4480142	0	1	501	563	3579239	75488	0	94	224	337	18	524	10	3997
pptc_2019	10	0	4	253	37	0	42090	11	20	178	15	13	3	0	266
prad_broad_2013	10	0	0	27	2	0	2617	4	2	17	7	0	19	0	50
prad_broad	4	2	1	6	4	0	5626	4	4	38	1	2	35	0	37
prad_cdk12_mskcc_2020	3	5	0	131	1	0	3863	3	0	49	27	9	0	0	6
prad_cpcg_2017	5	0	0	0	2	0	6061	0	2	7	2	0	0	0	73
prad_eururol_2017	587	0	1	3	3	0	1741	3	1	5	0	0	0	0	48459
prad_fhcrc	324	6	0	140	34	11028	19903	1	12	41	9	0	112	0	1153
prad_mcspc_mskcc_2020	1	1	0	41	2	0	1788	0	0	17	8	4	0	1	3
prad_mich	2	0	0	12	0	0	3785	0	2	14	0	0	0	0	38
prad_msk_2019	0	0	0	3	0	0	45	0	0	1	0	0	0	0	0
prad_msk_mdanderson_2023	75943	0	0	67	398	21915	30507	19	22	79	59	0	296	0	451
prad_msk_stopsack_2021	4	4	0	248	4	5	8612	0	0	76	34	11	0	5	2
prad_mskcc_2017	2	3	0	62	0	0	1617	1	0	13	7	4	0	0	0
prad_mskcc_cheny1_organoids_2014	14	0	0	13	2	0	236	2	0	697	0	0	2	0	17
prad_mskcc	0	0	0	0	1	0	304	0	0	0	0	0	2	0	13
prad_organoids_msk_2022	26	1	0	12	65	114	13024	1	0	23	6	0	86	0	4
prad_p1000	1214	16	1	517	72	10888	80740	2	1	179	52	27	406	4	1218
prad_pik3r1_msk_2021	2	3	0	136	1	2	4225	0	0	54	31	13	0	3	3
prad_su2c_2015	1545	0	1	147	53	0	22313	17	7	48	32	22	0	0	14401
prad_su2c_2019	607	0	1	523	106	0	50883	35	2	93	105	81	278	0	11852
prad_tcga	158	0	7	242	51	0	36719	47	11	116	41	5	0	0	3334
prad_tcga_pan_can_atlas_2018	1360	2	0	156	100	1737	30405	0	12	80	11	5	201	0	123
prad_tcga_pub	193	0	0	50	9	0	11932	0	5	21	3	2	0	0	1830
prostate_dkfz_2018	505507	0	0	0	41	0	11949	0	8	33	43	0	107	0	493802
prostate_msk_2024	10	5	1	310	5	9	10353	0	0	85	45	14	1	5	2
prostate_pcbm_swiss_2019	850	0	0	68	72	0	25886	95	8	125	25	5	0	0	0
ptad_msk_2024	2	0	0	4	2	0	847	0	0	5	1	0	0	0	0
rbl_cfdna_msk_2020	6400	5	0	118	0	10515	17719	2	0	32	2	13	143	14	977
rbl_mskcc_2020	1	0	0	7	0	2	259	0	0	9	0	0	0	0	0
rectal_msk_2019	2	0	0	98	0	0	3096	2	0	14	3	4	0	0	3
rectal_msk_2022	5677	2	1	535	129	7	30159	33	3	109	34	38	2	3	10
rms_msk_2023	0	0	0	0	0	0	22	0	0	0	0	0	0	0	0
rms_nih_2014	18	0	0	6	1	0	528	0	0	2	0	0	0	0	86
rt_target_2018_pub	2	0	0	0	0	0	100	0	0	0	0	0	0	0	20
sarc_mskcc	0	0	0	0	0	0	43	0	0	0	0	0	2	0	0
sarc_tcga	147	0	0	67	37	0	16701	4	0	78	30	3	0	0	3309
sarc_tcga_pan_can_atlas_2018	5043	2	0	54	129	2918	22978	0	9	51	18	2	156	1	123
sarc_tcga_pub	82	0	0	52	23	0	10589	3	0	39	21	1	67	0	2000
sarcoma_msk_2022	164	6	1	102	1614	59	9371	1	0	121	53	14	18	9	2
sarcoma_msk_2023	1	0	0	5	0	0	315	0	0	2	3	0	0	0	0
sarcoma_ucla_2024	7	0	0	5	4	26	392	0	0	1	2	1	1	1	27
scco_mskcc	0	0	0	2	0	0	17	0	0	0	0	0	0	0	0
sclc_cancercell_gardner_2017	4227	0	28	138	510	2	42816	608	56	388	58	18	4	0	78167
sclc_clcgp	0	6	0	10	3	0	8542	0	0	15	3	7	0	0	137
sclc_jhu	6	0	0	1	15	0	7860	0	4	12	1	0	0	0	78
sclc_uc_2024	228	28	0	37	266	869	26915	1	15	82	9	15	169	0	171
sft_sysucc_2023	26	1	0	4	2	4	1229	0	0	16	0	0	0	0	0
skcm_broad_brafresist_2012	46	10	3	295	57	0	46176	38	20	112	33	7	2	0	819
skcm_broad	13370	80	3	35	135	0	87802	8	73	151	64	18	3	0	137513
skcm_broad_dfarber	32	3	0	3	16	0	9124	1	6	20	5	1	0	0	107
skcm_dfci_2015	79	0	0	0	143	795	53085	0	36	55	24	0	3	0	22
skcm_mskcc_2014	112	0	0	0	136	743	37437	0	27	42	13	0	9	0	24
skcm_tcga	469	0	10	248	423	0	309747	41	183	523	100	9	0	0	12405
skcm_tcga_pan_can_atlas_2018	23277	3	0	218	1593	31091	492557	0	323	869	97	16	3950	1	2869
skcm_tcga_pub_2015	816	434	6	229	426	0	278968	40	177	387	96	74	3	0	8685
skcm_vanderbilt_mskcc_2015	7	0	0	3	0	0	811	0	0	0	0	0	0	0	1
skcm_yale	1	1	0	40	21	0	25932	0	2	21	0	0	0	0	151
soft_tissue_msk_2023	0	0	0	1	0	0	77	0	0	0	0	0	0	0	0
stad_oncosg_2018	38227	0	23	41	23	787405	32100	1	0	41	33	7	208	0	3200
stad_pfizer_uhongkong	37	0	0	415	14	0	17221	8	3	72	41	12	0	0	78
stad_tcga	364	0	14	3082	199	0	190519	68	0	323	76	28	0	0	14544
stad_tcga_pan_can_atlas_2018	11170	1	4	2398	670	13060	212589	0	81	418	89	51	1290	2	782
stad_tcga_pub	61	8	2	553	98	0	145017	23	43	258	41	48	0	0	2368
stad_uhongkong	23	0	0	8	7	0	4554	0	0	15	4	4	28	0	2393
stad_utokyo	466	0	0	3	10	0	2412	1	0	10	2	1	15	0	3696
stes_tcga_pub	696	0	12	3094	259	0	216467	107	1	354	101	28	0	0	20779
summit_2018	20	0	0	17	0	0	980	19	0	5	0	1	0	0	0
tet_nci_2014	1	0	0	10	4	0	729	0	0	3	4	0	3	0	36
tgct_tcga	113	2	0	53	31	0	12034	3	3	44	14	1	0	0	2374
tgct_tcga_pan_can_atlas_2018	273	0	0	9	19	337	2737	0	3	8	0	8	12	0	12
thca_tcga	7	0	0	25	8	0	7180	2	1	8	2	1	0	0	224
thca_tcga_pan_can_atlas_2018	517	0	0	28	47	843	10246	0	5	19	5	2	61	1	83
thca_tcga_pub	36	0	0	22	7	0	6527	2	1	4	2	1	37	0	133
thym_tcga	22	0	0	41	5	0	2500	2	0	10	1	0	0	0	483
thym_tcga_pan_can_atlas_2018	921	0	0	25	17	442	3460	0	3	13	1	2	20	0	15
thyroid_mskcc_2016	60	0	0	3	1	0	495	4	0	1	0	0	0	0	0
tmb_mskcc_2018	510	19	2	239	8	0	19576	25	0	56	42	28	0	0	58
uccc_nih_2017	10	0	0	1	0	0	1607	0	0	2	1	0	0	0	79
ucec_ancestry_cds_msk_2023	56	7	1	1010	3	4	13973	0	0	82	52	30	0	1	9
ucec_ccr_cfdna_msk_2022	1	0	0	20	4	0	569	0	0	1	0	2	0	0	0
ucec_cptac_2020	0	0	1	696	0	0	49441	40	21	1267	8	6	0	0	583
ucec_msk_2018	1	1	0	83	2	0	2441	4	0	6	3	4	0	0	0
ucec_msk_2024	0	0	0	68	1	0	1494	1	0	2	1	1	0	0	0
ucec_tcga	404	0	5	242	206	0	175760	36	73	317	72	21	0	0	7725
ucec_tcga_pan_can_atlas_2018	144373	5	1	3601	2871	71380	704406	0	335	1047	295	47	4560	7	2728
ucec_tcga_pub	403	0	5	242	206	0	175742	36	68	308	71	21	0	0	7724
ucs_jhu_2014	16	0	0	13	40	0	17934	2	4	24	3	0	0	0	1112
ucs_msk_2024	8	0	0	70	0	2	3733	0	0	10	1	0	0	0	1
ucs_tcga	37	0	1	58	12	0	9977	1	3	19	10	0	0	0	1221
ucs_tcga_pan_can_atlas_2018	565	0	0	42	34	624	9034	0	3	16	0	0	60	0	31
um_qimr_2016	3	0	0	1	0	0	289	0	0	0	2	2	0	0	2
urcc_mskcc_2016	0	0	0	4	0	0	155	0	0	0	0	0	0	0	0
usarc_msk_2020	1	0	0	5	0	0	337	1	0	0	0	1	0	0	1
utuc_cornell_baylor_mdacc_2019	0	0	0	11	5	0	4088	0	0	6	1	1	18	0	2
utuc_igbmc_2021	14	0	0	12	5	51	4135	0	1	9	4	0	22	0	1
utuc_msk_2019	31	0	0	50	1	0	2168	6	0	10	2	0	0	0	5
utuc_mskcc_2015	9	0	0	23	0	0	1074	0	0	1	1	0	0	0	4
utuc_pdx_msk_2019	38	0	0	71	3	0	1984	0	0	29	1	0	0	0	2
uvm_tcga	0	0	0	17	1	0	2068	0	0	8	5	1	0	0	74
uvm_tcga_pan_can_atlas_2018	55	0	0	10	5	97	1749	0	0	2	1	1	11	0	4
vsc_cuk_2018	6	0	0	1	2	0	2948	2	0	8	0	0	20	0	50
wt_target_2018_pub	1	0	0	3	1	0	840	10	0	5	0	2	0	0	20
Total	7554137	4102	694	119567	53529	6820247	14393516	38002	4735	77247	13836	11556	47330	627	1473005

Cancer Gene Mismatches

1210 cancer genes have 100% match. Mismatches in 1137 gene(s):

Gene	Variants	Conseq Mismatches	HGVSp Mismatches	HGVSc Mismatches
TP53	127533	24	17	2820
DNMT3A	17984	0	77	1849
ARID1A	30678	3	26	1429
APC	45376	0	11	1388
TET2	14959	0	14	1208
PPM1D	5489	0	2	1180
LRP1B	31379	1	26	1079
PTEN	22309	2	1	1082
GATA3	7885	13	0	946
ASXL1	10992	0	5	801
EGFR	22503	2	126	658
ROBO1	10149	0	2	777
MAGI2	11770	0	11	710
NRG1	9280	0	3	714
CDKN2A	15821	28	41	635
ERBB4	19188	1	35	667
NF1	20914	1	15	661
PTPRT	23708	1	9	665
ATRX	15671	0	4	651
ARID1B	12491	5	52	573
KMT2D	29220	3	13	587
ZFHX3	18595	0	14	579
PIK3R1	9973	0	44	492
RNF43	9341	0	3	520
GPHN	3769	0	6	490
KMT2C	23113	0	14	473
RB1	33162	1	9	471
CREBBP	15374	0	38	440
ATM	19812	0	16	450
RAD51B	4578	0	3	462
NEGR1	8028	3	1	458
BRAF	15150	0	0	458
JAK1	7719	0	2	452
NOTCH1	14657	0	7	442
DPYD	7216	10	11	426
ERBB2	9950	5	179	262
MAP3K1	8751	0	13	427
PBRM1	10368	2	5	423
ACVR2A	2349	0	3	410
PCLO	14340	0	25	385
LPP	4045	0	0	405
CAMTA1	6990	0	10	393
PTPRK	5024	0	3	399
SMYD3	4633	0	1	401
BRCA2	13865	0	4	393
SPEN	13978	0	14	383
KDM6A	11431	1	6	389
MSH3	5303	0	17	371
CDH1	9153	0	9	378
AFF3	5341	0	16	366
CUX1	5410	2	11	369
CIC	9008	1	7	370
SETD2	13127	0	2	375
UBR5	4479	0	3	372
NCOR1	10822	0	11	359
RPL22	911	0	0	365
FGF14	4194	0	0	359
INPP4B	7950	0	2	357
FAF1	2746	2	6	350
RUNX1	10443	0	2	350
PRKDC	6356	0	13	333
ARID2	11669	1	2	333
ALK	13465	3	7	322
PTCH1	8533	0	10	316
STAG1	3437	0	1	325
FAT1	21023	0	7	316
ERC1	3166	0	4	308
FHIT	7170	0	0	312
RYBP	1540	227	0	83
EBF1	4071	0	9	298
KDM4C	2841	0	3	301
RELN	10159	35	29	231
EP300	12026	0	6	285
MGA	12476	0	7	283
CTCF	6510	0	2	287
NCOA2	3342	0	3	286
JARID2	3316	0	1	285
KIT	8629	0	69	217
TCF12	2492	0	1	284
B2M	3948	5	1	276
EPHA3	12818	0	5	277
EXT1	2767	0	3	279
BACH2	3181	2	6	272
SNX29	3614	0	3	274
PDS5B	2491	0	3	273
SLIT3	6688	0	12	264
ARHGAP26	2774	0	7	268
KSR2	5158	0	10	263
FBXW7	12905	1	2	269
NPM1	2538	0	1	271
PIK3CA	38160	10	9	250
GRIN2A	16265	0	11	256
FIP1L1	3043	0	0	265
PRKD1	5892	0	11	250
MLLT10	2239	0	1	255
CDK12	7668	0	7	247
AR	9019	1	29	222
ATR	10236	1	6	244
NTRK2	6172	0	5	246
TCF7L2	7327	0	3	248
ZNF521	4338	1	17	233
PTPRD	30054	1	3	246
NSD1	9912	0	7	242
WRN	2384	0	2	247
ANKRD11	10634	0	6	242
SOX9	6352	3	5	239
PIK3C2G	10565	0	2	243
NCOA3	5432	0	2	242
DDX10	2054	0	5	238
KAT6B	3175	0	4	239
AKT3	4468	0	3	238
VHL	4057	8	1	232
SND1	3258	0	3	232
IGF1R	7197	0	15	219
KDM5A	6980	0	4	229
NOTCH2	9756	0	5	227
PREX2	12983	0	12	219
SLIT2	6826	0	11	220
FOXP1	7254	0	1	229
ARID5B	5757	0	6	223
ASXL2	6414	0	3	222
GNAQ	3040	0	0	223
EPHA5	12846	1	13	207
GPC3	2490	0	1	218
BRIP1	5357	0	10	206
GSK3B	2925	0	1	215
AXIN2	5293	0	3	212
STAG2	9258	1	2	212
CARD11	9863	0	9	205
KMT2A	12192	0	13	201
PHLPP1	2256	0	1	213
RUNX2	2590	0	2	209
SMAD4	13021	3	3	204
FOXA1	6438	9	3	197
EPHB1	11156	0	0	208
SETBP1	5099	0	9	199
ABL1	5524	0	6	201
CACNA1D	4335	0	8	198
MAML2	2862	0	1	204
RASA1	6004	0	1	203
ERG	4841	0	2	199
KMT2B	11407	0	7	194
NCOR2	5058	1	7	193
ZBTB20	4186	16	0	184
FANCC	2753	0	1	198
ROS1	12948	0	17	181
STK11	8419	0	8	190
QKI	2059	0	1	196
HDAC4	3496	0	2	194
FLT1	8760	0	3	190
ZMYM2	1991	0	1	190
PRKCB	4295	1	5	184
ETV6	4296	0	5	184
INPPL1	5777	0	7	182
ESR1	8287	4	0	184
SMARCA4	14087	0	4	183
DIS3L2	2425	0	2	184
LARP4B	1736	0	2	184
MITF	3552	5	2	179
RSPO2	2140	0	1	185
ZNF292	3284	0	1	185
MLLT3	2317	0	0	185
MSI2	2802	0	0	185
NTRK3	10859	0	10	175
RPTOR	7306	0	4	181
FNBP1	1643	0	2	181
MSH6	6714	0	7	176
PTPN14	2732	0	7	176
FLT3	7479	0	9	173
JAZF1	2064	0	4	176
BRCA1	7599	0	1	178
TGFBR2	5782	0	1	178
ABCB1	4043	0	8	170
CDH4	7448	0	7	171
REV3L	3501	0	5	173
ATXN7	1912	0	6	171
CHEK2	4100	0	6	171
FLT4	8512	0	5	172
KRAS	43417	3	1	172
BCOR	10360	0	2	173
PTPN13	3476	0	2	173
GRM3	4893	0	6	166
IRS1	5601	0	6	166
TBX3	7008	0	3	169
EP400	4979	0	31	140
MBD6	1441	0	1	170
MAPKAP1	2422	0	2	168
NFIB	1991	0	3	167
PBX1	2733	0	2	168
SMARCA2	3408	0	7	163
NBN	3635	0	1	167
PTPRS	10461	0	8	160
EML4	1732	0	1	166
LRRK2	5168	0	9	158
TBL1XR1	2009	0	1	165
TP63	7102	3	2	161
MAP4K4	2468	0	3	162
CTNNA1	2481	0	2	162
TUSC3	2914	0	1	163
AFF1	2364	0	3	160
MECOM	6114	0	6	157
RUNX1T1	4174	0	10	153
TET1	8585	0	11	152
CDH2	3392	0	6	156
LRP6	2479	0	3	159
CDK6	2332	0	0	161
KDM5D	411	155	1	5
NUP214	2614	0	4	157
POLQ	3421	0	4	157
NOTCH3	11884	3	9	148
CBLB	2421	0	2	157
PMS1	3384	0	2	157
STAT5B	3145	0	3	156
TP53BP1	5951	0	7	151
ZFP36L2	1196	0	2	156
ARHGEF12	2394	0	4	153
CHD2	3207	0	4	153
PTPRO	3305	0	4	152
ARID4B	2089	0	1	154
TLE4	2239	0	3	152
TRRAP	5812	0	14	141
ABL2	2587	0	2	152
BCORL1	3225	0	3	150
ZNRF3	2555	0	1	151
EPS15	1747	0	0	151
KAT6A	3306	0	5	146
BMPR1A	2557	0	0	150
MAP2K4	4402	0	8	142
CASP8	4954	0	5	144
FAT4	11667	0	33	116
PIK3CB	4870	1	2	146
MYH9	3731	0	6	142
RAP1GDS1	1532	0	0	148
PAG1	1301	0	2	145
HIP1	2436	0	1	145
GAS7	2474	0	5	140
SOS1	3955	0	2	143
AXIN1	4898	0	4	140
MET	8092	0	5	139
PIK3R3	2417	0	0	144
NCOA1	2707	0	3	140
SEC31A	1766	0	2	141
FYN	3400	0	1	141
ATXN2	2011	0	3	137
FGF12	4343	0	2	138
KIAA1549	3636	0	12	128
WWTR1	2033	0	1	139
EZH2	4721	0	2	137
ACVR1	2406	0	2	136
GLI1	5957	0	11	127
ANKRD26	2194	1	5	131
BCL9	2281	0	4	133
POLE	10310	0	5	132
CUL3	4279	0	4	131
HLA-A	2981	0	0	135
AXL	5147	0	6	128
RICTOR	6292	0	1	133
BAP1	5891	0	4	129
CHN1	1656	0	0	133
FUBP1	3228	1	2	130
KDM2B	2425	0	7	125
KLF3	837	0	2	130
NUP98	2537	0	3	129
PICALM	1329	0	1	131
RAD50	4897	0	3	128
TRIM33	1999	0	2	129
BLM	5068	0	2	128
CDK8	2661	0	1	129
PIK3C3	3712	0	5	123
CLIP1	2152	0	4	123
MAPK1	1776	0	0	127
MYH11	4085	0	10	117
RBM10	8790	0	4	123
BARD1	3580	0	4	122
CBL	4954	0	6	120
ELF3	3563	3	4	119
ASXL3	5150	0	6	119
CDC73	3534	0	3	122
DROSHA	4881	0	1	124
TGFBR1	3692	1	2	122
BCL11A	2761	0	2	121
CHD4	3223	0	8	115
KTN1	1871	0	5	118
LYN	2789	0	1	121
MEN1	3932	0	3	119
MTOR	10311	1	9	112
NF2	4268	1	2	118
NIN	2886	0	5	116
POLD1	5782	0	11	110
ARID4A	1770	0	1	119
TSC1	6180	0	4	116
CPS1	4191	1	14	104
PAX5	4242	2	3	114
BCL9L	2038	0	3	115
CBFB	2343	0	2	116
SMO	4308	0	15	103
ARHGEF28	2658	0	3	113
MSH2	4953	5	2	109
MYBL1	1142	0	1	115
PLK2	3012	0	10	106
TAF1	3223	0	6	110
ADARB2	4630	0	3	112
MEF2C	1946	0	1	114
RABEP1	1311	0	3	112
FOXO3	1410	0	0	114
JAK2	6018	0	6	108
CDKN1B	2301	0	2	111
HLA-B	2781	4	1	108
PTPRC	3643	0	7	106
CDKN1A	2589	0	1	111
PAK1	2314	0	3	109
PLCG2	6911	0	3	109
PRKCI	2445	0	1	111
PUM1	1922	0	2	110
ETV1	3851	0	1	110
MLH1	3962	0	2	109
MYCN	9195	0	5	106
CDH11	3574	0	11	99
FANCM	2991	0	1	109
INSR	5549	0	3	107
NT5C2	986	0	4	105
CSF3R	3648	0	5	103
DICER1	7173	0	9	99
ABI1	1161	0	0	107
FANCL	987	0	2	105
GAB2	1696	0	4	103
IL7R	4705	0	0	107
MAP2K1	3154	0	2	105
PSIP1	1053	0	0	107
RAD21	3044	0	2	104
HNF1A	4215	0	1	104
SGK1	2359	0	2	103
XPO1	3974	0	5	100
HOOK3	1446	0	1	103
TRIM24	1841	0	1	103
GTF2I	1147	0	1	102
LIFR	2688	0	3	100
SNCAIP	2786	0	3	100
SUFU	2468	0	0	103
AGK	1056	0	0	102
BRD4	6078	0	2	100
TLE1	1700	0	1	101
USP8	1724	0	2	100
ATG5	871	0	0	101
EPHA7	9256	0	6	95
SMAD3	3861	14	2	85
SPRED1	2031	0	0	101
CTNNB1	11031	1	5	94
MN1	1993	0	5	95
PCM1	2140	0	2	97
PPFIBP1	1866	0	1	98
AGO2	3430	0	0	98
CNTRL	2457	0	2	96
COL5A1	5365	0	11	87
FBXO11	1422	0	1	97
FOXO1	3233	0	2	96
PDE4DIP	7563	1	18	79
BCL11B	2423	0	3	94
KDR	9166	1	5	91
RNF213	5817	0	14	83
BCL2	6677	0	2	94
CCAR1	1465	0	2	94
PALB2	4378	0	4	92
ERCC6	2211	0	3	92
MDM2	2028	0	1	93
PGR	5477	0	8	86
SZT2	3465	0	14	80
TOP1	3112	0	3	91
ARAF	3216	1	2	90
ARHGAP35	3015	0	5	88
CLTC	1962	0	5	88
FRS2	1149	0	2	91
IQGAP1	2105	0	10	83
LEF1	1246	0	1	92
SH2B3	2956	0	6	87
STIL	1614	0	2	91
TRAF3	1482	0	2	91
LATS2	5191	0	6	86
ANK1	4930	0	8	83
CSDE1	3239	0	0	91
DNMT3B	4597	0	1	90
SHOC2	1570	0	3	88
ZBTB16	2102	1	7	83
DAZAP1	949	0	0	90
DNMT1	5590	0	3	87
MOB3B	1122	0	1	89
MYO5A	2726	0	9	81
SETD1B	1963	0	3	87
STAT4	1828	0	4	86
TRIP11	2163	0	4	86
INPP4A	4354	0	2	87
MED12	9934	0	13	76
MERTK	2060	0	5	84
WWP1	1638	0	2	87
MLH3	1382	0	1	87
TEK	4618	0	1	87
BUB1B	1288	0	2	85
FLCN	3130	0	6	81
TSHR	4806	0	2	85
ECT2L	1526	0	4	82
MAP3K13	4772	0	8	78
TLL2	2190	0	8	78
ZRSR2	2004	0	11	75
BAX	644	0	1	84
NUP93	3370	0	3	82
PTPN2	1049	0	0	85
SMG1	3457	0	5	80
TSC2	8324	0	7	78
INPP5D	2405	0	5	79
PTPN11	3858	0	2	82
YAP1	2123	0	0	84
ZMYM3	1949	0	5	79
CREB3L2	1588	0	1	82
FANCA	5855	1	5	77
GPS2	1703	0	3	80
MIB1	1588	0	1	82
CRTC1	1344	0	1	81
LGR5	2122	0	6	76
PPARG	2506	0	1	81
SALL4	1931	0	6	76
SP140	2322	0	8	74
TET3	2511	0	1	81
ALDH2	907	0	1	80
FGFR2	6483	0	1	80
IKBKB	1448	1	2	78
SESN1	1422	0	0	81
STAT3	3502	0	5	76
STRN	1417	0	3	78
TPR	3048	0	1	80
BCR	2780	0	7	73
ESCO1	1214	0	0	80
FANCD2	2530	0	3	77
FANCI	1644	0	2	78
GNA12	1120	0	1	79
HIRA	1518	0	2	78
IKZF2	1829	0	2	78
EXT2	1506	0	1	78
HMGA2	1151	0	0	79
MALT1	2387	0	5	74
TEC	1378	0	2	77
GNAS	5796	4	7	67
MGAM	6066	2	12	64
NOTCH4	9732	3	2	73
PAK3	2343	0	0	78
SS18	938	0	2	76
CHEK1	1889	0	1	76
NUMA1	2454	0	5	72
POT1	2105	0	2	75
SUZ12	2706	1	4	72
CREB1	704	0	1	75
EPAS1	2816	0	3	73
GAB1	1536	0	0	76
PRCC	838	0	0	76
RRAS2	1462	0	0	76
SETDB2	918	0	1	75
DDR2	5141	6	5	64
IRS2	5947	0	1	74
PIK3CD	4145	0	2	73
IDH1	6905	1	1	72
KDM5C	6406	1	2	71
RHOA	2887	0	0	74
SPOP	5544	0	1	73
SYK	3335	0	3	71
HDAC2	923	0	0	73
LRP5	2649	1	12	60
NFE2L2	4756	0	1	72
PIK3C2B	2732	0	8	65
RARA	2744	0	4	69
TCEA1	724	0	0	73
CASR	2950	1	8	63
IFNGR1	1806	0	1	71
MAP3K7	1251	0	3	69
AGO1	1295	0	4	67
ARNT	1285	0	4	67
E2F3	2052	0	0	71
PARP1	3673	0	5	66
PRDM16	4149	0	6	65
AMER1	7303	1	3	66
ERF	2673	0	1	69
ETS1	1661	0	0	70
LATS1	5000	0	0	70
STAT2	1032	0	3	67
TNFAIP3	3290	0	4	66
CAD	2697	0	4	65
CCDC6	1041	0	1	68
CYLD	3166	0	1	68
MKI67	4048	0	8	61
SMC3	1482	0	1	68
ACSL3	1144	0	4	64
DNM2	1987	0	3	65
REL	2222	0	1	67
SETD3	1071	0	2	66
SLX4	5299	0	6	62
WT1	4642	0	1	67
AFF4	1665	0	0	67
CRTC3	1143	0	2	65
AIM2	1203	0	2	64
CALR	1588	0	3	63
CYP19A1	1637	0	6	60
PTPN1	861	0	1	65
TCF3	3407	0	1	65
TFE3	953	0	0	66
YY1	771	0	3	63
HGF	7260	0	7	58
RECQL	1979	0	2	63
SMAD2	3785	5	3	57
ALB	1931	1	3	60
CEBPA	1857	1	1	62
DOT1L	6985	0	8	56
FANCE	801	0	1	63
IKZF3	1628	0	0	64
IL6ST	1219	0	2	62
RNASEH2B	539	0	0	64
CD36	2270	0	1	62
RSPO3	986	0	1	62
SESN3	1679	0	0	63
ATF1	621	0	2	60
NOD1	1393	0	10	52
RAD52	1605	0	0	62
SLC1A2	1473	0	0	62
CREM	1149	0	2	59
DIS3	3598	0	1	60
EIF4E	998	0	0	61
FGF1	715	0	1	60
NFATC2	2538	0	4	57
SETDB1	2316	0	3	58
VAV1	2059	0	1	60
BCL2L1	1010	0	0	60
IDH2	3114	0	3	57
INTS6	1114	0	0	60
ITPKB	1803	0	2	58
TOP2A	1782	0	1	59
PDCD11	2056	0	4	55
SMARCB1	2740	0	0	59
TAF15	1042	0	1	58
BCL6	6622	0	0	58
CCND3	1679	0	2	56
FGFR3	6773	0	3	55
IRS4	2012	0	2	56
PMS2	3175	0	3	55
SAMHD1	1217	0	2	56
AGGF1	955	0	1	56
CIITA	2172	0	8	49
LRIG3	1513	0	1	56
RAD51C	1663	1	2	54
HIF1A	1163	0	0	56
MDC1	6259	1	0	55
MEF2B	2209	0	0	56
PHLPP2	1683	0	1	55
SETD1A	2380	0	5	51
CD58	819	0	1	54
HSP90AA1	1400	0	1	54
RAF1	2982	0	1	54
TFG	714	0	0	55
ATP1A1	1183	1	2	51
EIF3E	1801	0	0	54
EZH1	2106	0	1	53
FOLH1	1939	0	2	52
KEAP1	8902	0	0	54
PPP2R2A	858	0	0	54
PTK7	1768	0	4	50
ZFP36L1	1234	0	0	54
DKK2	2800	0	6	47
ELP2	1147	0	1	52
ERBB3	8551	1	4	48
MYO18A	2628	0	5	48
RET	6668	1	5	47
SAMD9L	2709	0	5	48
TFRC	1047	0	2	51
TYK2	1977	0	3	50
ERRFI1	2020	0	0	52
ETNK1	1012	1	0	51
GMPS	1093	0	3	49
JUN	1738	0	0	52
KIF5B	1126	0	1	51
ONECUT2	1245	0	7	45
PRPF8	2346	0	4	48
ARID3B	938	0	3	48
BACH1	1462	0	0	51
DEK	679	0	0	51
ELL2	1085	0	1	50
RPS6KB1	757	0	2	49
VAV2	2189	0	1	50
ATIC	996	0	0	50
CARM1	2012	3	2	45
CDC42	812	0	0	50
CSF1R	4594	0	5	45
PTPRB	4286	0	5	45
RHEB	949	0	0	50
SHQ1	2065	0	0	50
SRP72	871	0	1	49
STK19	1421	0	0	50
U2AF2	925	0	1	49
YWHAE	634	0	2	48
ABCC3	2287	0	5	44
CLTCL1	2159	0	4	45
DCUN1D1	1214	0	2	47
DDX6	790	0	0	49
ECSIT	655	0	0	49
OGT	1371	0	2	47
SF3B1	9238	0	4	45
SF3B2	1081	0	1	48
BIRC3	2115	0	1	47
BRD3	1369	0	1	47
FBXO31	921	0	2	46
GNB1	1076	0	1	47
ITK	1978	0	6	42
LCP1	1205	0	6	42
MTAP	782	0	0	48
PDGFRA	8080	0	3	45
PLAG1	1301	0	3	45
POLH	775	0	4	44
YES1	2222	0	1	47
ZNF331	1349	0	2	46
FBXW2	656	0	1	46
IKZF1	6083	0	3	44
MYB	1295	0	3	44
NADK	1082	0	1	46
NKX2-1	2582	0	1	46
SMARCA1	1564	0	1	46
TNFRSF11A	1039	0	5	42
XPC	928	0	2	45
GATA4	1109	0	0	46
MAL2	684	0	1	45
MST1	1792	0	1	45
RAD54L	2356	0	1	45
RANBP2	3456	0	7	39
BRSK1	1488	0	7	38
DDX4	1411	0	3	42
ETV5	1212	0	1	44
GNA13	1376	0	1	44
MAP3K6	1392	0	8	37
PDGFRB	5422	0	6	39
PML	1942	0	0	45
PPP6C	1668	0	0	45
PRDM1	3905	0	6	39
RPS6KA4	3486	0	2	43
JAK3	5332	0	5	39
PIK3CG	8703	0	12	32
RECQL4	4448	0	3	41
RTEL1	2727	0	2	42
SESN2	1597	0	1	43
SETD7	914	0	1	43
SRSF2	2948	0	0	44
TLE3	1299	0	0	44
USP6	2287	0	13	31
AKT2	2326	0	2	41
CHIC2	610	0	1	42
CTLA4	1273	0	1	42
ERCC5	4322	0	0	43
FGFR1	4225	0	2	41
HSP90AB1	1025	0	0	43
IRF2	1178	0	0	43
MDM4	1879	0	2	41
MLLT1	1214	0	4	39
PHF1	883	0	1	42
PPP4R2	1153	0	1	42
SFRP1	870	0	0	43
TMPRSS2	2835	0	2	41
ACVR1B	1531	0	1	41
CCT6B	993	0	2	40
EZR	966	0	4	38
GEN1	1031	0	2	40
GOPC	778	0	2	40
INHBA	4091	0	2	40
PAX3	1736	0	2	40
RHOH	686	0	0	42
BTK	3499	2	4	35
FGF5	1053	0	1	40
FGF9	649	0	1	40
HDAC7	1165	0	4	37
MST1R	4470	0	6	35
NACA	2113	0	0	41
PRRX1	1304	0	2	39
ADHFE1	796	3	4	33
ALDH1A3	915	0	2	38
ERCC4	3218	0	3	37
EWSR1	1251	0	2	38
FGF2	541	0	0	40
FLYWCH1	972	0	4	36
IGF1	1906	0	4	36
L1TD1	1231	0	8	32
PPP1CB	734	0	1	39
A1CF	1923	0	3	36
HNF1B	1067	0	3	36
MYC	4454	2	2	35
NTRK1	5157	0	7	32
SMARCE1	745	0	0	39
STAT1	1301	0	0	39
TRAF7	2852	0	1	38
ALOX12B	2702	0	2	36
CNOT3	1307	0	1	37
DDX3X	1615	1	2	35
EPCAM	1188	0	1	37
KLF5	1053	0	1	37
PDK1	808	0	0	38
RIOK2	667	0	0	38
SETD5	1968	0	3	35
STAT6	1397	0	1	37
TAP2	2178	0	3	35
AJUBA	671	1	1	35
ASMTL	1162	0	2	35
ATRIP	766	0	0	37
BAALC	774	0	1	36
CCND1	2089	0	0	37
DHX15	1155	0	2	35
ELN	1657	0	0	37
HDAC1	797	0	0	37
HOXA3	1129	0	0	37
IFNAR1	671	0	2	35
MCL1	1640	0	2	35
RPN1	788	0	1	36
SAMD9	2655	0	2	35
TIPARP	1021	0	0	37
UPF1	3334	0	4	33
ADAR	1674	0	3	33
FGFR4	4214	0	5	31
MAX	1841	2	0	34
NONO	809	0	1	35
PPP2R1A	4655	0	2	34
RXRA	2795	0	2	34
STAT5A	2230	0	0	36
USP1	730	0	1	35
VEGFB	372	0	1	35
WIF1	1120	0	0	36
DUSP22	1844	0	1	34
EIF4A2	1941	0	1	34
ESCO2	698	0	3	32
FLI1	1754	0	3	32
MSI1	1466	0	0	35
MSN	1455	0	1	34
PC	1836	0	2	33
RAC1	1724	1	1	33
RBM15	1118	0	3	32
RRAGC	1032	0	0	35
TTL	647	0	2	33
CTR9	1525	0	1	33
DCTN1	1574	0	5	29
FGF10	1206	0	1	33
GATA6	947	0	0	34
KAT7	957	0	1	33
NUF2	1734	0	1	33
PHF6	1291	1	0	33
RAD17	833	0	1	33
RAD51D	1156	0	1	33
U2AF1	3551	0	0	34
XPA	467	0	0	34
XRCC2	1298	0	1	33
ALDH1L2	1195	0	1	32
ASCL1	480	0	15	18
BCL10	1184	0	1	32
BCL7A	874	0	1	32
CCND2	1997	0	2	31
DDX5	797	0	1	32
EGFL7	951	0	1	32
EGR1	962	0	2	31
ERCC3	2647	0	1	32
MLF1	684	0	1	32
PSMB2	419	0	1	32
TERT	24276	5	3	25
TRAF2	2129	0	0	33
CCNB3	2108	0	6	26
CRKL	962	0	0	32
ELL	1099	0	2	30
HNRNPA2B1	783	0	2	30
MLLT6	1213	0	4	28
PASK	2068	0	1	31
PGBD5	1571	0	0	32
PIK3R2	3502	0	2	30
RPS6KB2	1787	0	2	30
COL1A1	2762	0	5	26
FZR1	864	0	4	27
KLF4	2144	0	0	31
POLG	1406	0	6	25
ZNF217	1729	0	2	29
DDR1	1599	0	1	29
ELK4	602	0	0	30
GTSE1	1039	0	2	28
MYOD1	2133	0	0	30
NDRG1	1036	0	0	30
RIT1	1407	1	1	28
SDHA	3256	0	0	30
SDHC	873	0	1	29
WDR90	2055	0	3	27
ACSL6	1414	0	2	27
BCL2L11	1505	0	0	29
DNAJB1	1224	5	1	23
FES	978	0	7	22
GABRA6	2838	1	4	24
HLF	827	0	2	27
IL21R	1500	0	3	26
KLHL6	1866	1	3	25
PDCD1LG2	849	0	1	28
CAV1	603	0	0	28
CD79A	1429	0	0	28
DDB2	654	0	1	27
GOLGA5	1008	0	2	26
IKBKE	2888	0	4	24
SMC1A	1507	0	2	26
TRAF5	777	0	2	26
XRCC1	858	0	1	27
CUL4A	877	0	1	26
EIF1AX	1339	16	0	11
EPHB4	1525	0	1	26
FURIN	1035	0	5	22
IRF4	3207	0	4	23
MUTYH	2348	0	0	27
NCOA4	727	2	1	24
NFKB2	945	0	3	24
PAX7	1536	0	0	27
PNRC1	1140	0	1	26
UBTF	1117	0	2	25
ZNF750	1116	0	3	24
ACTB	1094	0	4	22
ALOX5	1510	0	6	20
AURKA	1660	0	1	25
BRD2	1293	0	2	24
CBLC	790	0	2	24
ELF4	1003	1	1	24
FANCB	958	0	1	25
FSTL1	772	0	2	24
KDSR	495	0	0	26
PDCD1	2352	0	0	26
PDPK1	1057	0	0	26
RPL5	594	0	0	26
SPRTN	703	0	0	26
XIAP	1909	0	1	25
ZNF384	947	0	1	25
APCDD1	908	0	1	24
FGF7	631	0	2	23
GATA2	2922	0	2	23
LZTR1	2091	0	2	23
P2RY8	1370	8	0	17
POU2F2	1278	0	0	25
SETD4	615	0	1	24
SLC34A2	1434	0	6	19
SOX17	4005	0	5	20
TPM4	506	0	0	25
ARID3A	918	0	3	21
CCNB1IP1	453	0	0	24
CCNE1	1694	0	1	23
CD22	1543	0	5	19
CTC1	1218	0	3	21
FUS	1033	0	4	20
IGF2	1643	0	0	24
MS4A1	938	0	4	20
MTHFD2	461	0	0	24
NAB2	642	0	2	22
PATZ1	906	0	1	23
SDHB	1115	0	0	24
SEPTIN6	479	0	0	24
TLE2	1236	0	4	20
TPMT	380	0	0	24
XBP1	481	0	1	23
ATP6V1B2	736	0	1	22
HEY1	396	0	1	22
MEF2D	952	0	2	21
NRAS	7291	0	0	23
OMD	433	0	1	22
REST	1531	0	3	20
BBC3	933	2	0	20
FGF6	832	0	5	17
HSD17B2	816	0	0	22
INHA	1614	0	1	21
MBD4	616	0	0	22
NFKBIE	622	0	2	20
PRDM14	2723	0	3	19
TMEM30A	686	0	0	22
YY1AP1	1118	0	3	19
ZBTB7A	956	0	2	20
BCL3	700	1	0	20
BTLA	535	1	1	19
CD28	625	0	0	21
CMTR2	829	0	3	18
CRBN	656	0	0	21
FH	2072	0	0	21
KBTBD4	760	0	1	20
LASP1	681	0	0	21
LCK	1098	0	2	19
PAFAH1B2	420	0	0	21
SRC	2454	0	1	20
CDKN2C	1076	0	0	20
CENPA	671	0	0	20
COL2A1	2381	0	1	19
DAXX	3861	0	0	20
EGR2	1311	0	1	19
ERCC2	4087	0	3	17
GREM1	989	0	1	19
KNSTRN	1314	3	1	16
RELA	871	0	2	18
SQSTM1	654	1	1	18
TRIM27	660	0	0	20
CREB3L1	960	0	1	18
FGF23	856	0	6	13
KEL	2261	0	4	15
MKNK1	704	0	3	16
PRKACA	744	0	1	18
SH2D1A	913	0	0	19
TPM3	702	0	1	18
TRIP13	760	0	4	15
ATP2B3	2245	1	4	13
CD74	484	1	1	16
CSF1	837	0	2	16
CYP17A1	698	0	4	14
EED	1795	0	3	15
EPOR	517	0	0	18
FOXL2	1912	0	2	16
GATA1	2014	0	2	16
HTATIP2	503	0	0	18
MAGED1	1287	0	0	18
MAP2K2	1967	2	1	15
NTHL1	743	1	1	16
PDGFB	720	0	3	15
PER1	1525	0	3	15
RAD51	986	0	0	18
SMARCD1	1810	0	2	16
TNFRSF14	1743	0	0	18
IRF8	1255	0	5	12
LTK	974	0	1	16
MAF	873	0	1	16
RALGDS	1381	0	2	15
SFPQ	819	0	2	15
SS18L1	724	0	2	15
TAP1	1857	0	1	16
TONSL	1357	0	4	13
ARID5A	720	0	4	12
ASPSCR1	1021	0	3	13
BIRC5	461	0	2	14
CD19	848	0	1	15
CDK4	1214	0	0	16
DUSP9	483	0	0	16
FAS	843	0	1	15
ICOSLG	1506	0	1	15
NFKBIA	1608	1	0	15
PARP2	732	0	1	15
PRF1	965	0	3	13
SCG5	480	0	0	16
SDHAF2	615	0	0	16
ALOX15B	860	0	4	11
CDX2	512	0	1	14
FGF4	1181	0	0	15
HLA-C	890	0	0	15
LZTS1	1122	0	2	13
NR4A3	1296	0	1	14
PRKAR1A	1732	0	0	15
PRSS1	1428	0	3	12
SOX10	785	0	0	15
TFEB	908	0	3	12
CLP1	525	0	4	10
CTDNEP1	296	9	0	5
DKK3	590	0	0	14
DTX1	1856	0	1	13
FCRL4	1422	0	8	6
FOXN4	813	0	1	13
LMNA	1134	0	1	13
NCSTN	928	0	2	12
PLCG1	1716	0	2	12
POU3F2	782	0	2	12
SERPINB3	1289	0	3	11
SH3GL1	731	1	0	13
STK40	1739	0	1	13
ZNF24	475	0	0	14
AKT1	4422	0	1	12
CD276	1606	0	1	12
ETAA1	1139	0	0	13
GRB7	945	0	4	9
HOXA9	497	0	0	13
HOXD13	549	0	4	9
MPL	2783	0	5	8
MTHFR	906	0	2	11
PIM1	3296	0	1	12
PTK6	724	0	2	11
PTPN6	808	0	3	10
SLC45A3	872	0	1	12
SOX2	1837	0	0	13
VTCN1	1421	1	3	9
YPEL5	317	0	0	13
BRD9	974	0	0	12
CDKN2B	716	0	0	12
CHTF8	260	1	0	11
CKS1B	210	0	0	12
CXCR4	1614	0	2	10
ETV4	687	0	1	11
HRAS	2367	0	0	12
LMO1	1100	0	0	12
MAD2L2	361	0	0	12
MAPK3	1448	0	2	10
NUTM1	1534	0	7	5
PCSK7	976	0	0	12
PHOX2B	2020	0	0	12
SDHD	709	0	0	12
SET	477	0	0	12
TMEM127	770	0	0	12
WEE1	759	0	1	11
ACTG1	869	0	0	11
ARID3C	569	0	0	11
BCL2L2	294	2	0	9
FOXO4	677	1	0	10
PHF19	652	0	1	10
PRSS8	422	0	0	11
SETD6	439	0	0	11
SFRP4	1222	0	1	10
TAL1	736	0	0	11
TRIB3	678	0	1	10
VEGFA	1347	0	2	9
APLNR	1058	0	1	9
BTG1	1007	0	0	10
CBFA2T3	1571	0	1	9
CD274	878	0	0	10
CNBP	360	0	0	10
DUSP4	1183	0	0	10
GID4	475	0	0	10
GNA11	1930	0	1	9
HOXD11	444	0	0	10
KLF6	585	0	1	9
KLK2	630	0	0	10
MTCP1	403	0	0	10
NQO1	368	0	1	9
SFRP2	580	0	1	9
SLFN11	1715	0	5	5
SOCS1	2087	0	1	9
SOCS3	364	0	1	9
UBE2A	388	0	0	10
APEX1	416	0	0	9
AURKB	1247	2	0	7
CANT1	697	0	4	5
EIF2B1	372	0	1	8
PARP3	683	2	3	4
PIGA	523	0	1	8
POU2AF1	813	1	1	7
SBDS	381	0	1	8
SRSF3	427	0	1	8
TNFSF13	126	0	0	9
ACKR3	715	0	0	8
ATMIN	755	0	0	8
BTG2	653	0	1	7
FANCF	518	0	1	7
GSTO1	275	0	2	6
ID3	672	0	0	8
ING1	869	0	2	6
MLLT11	207	0	0	8
POU3F4	910	0	1	7
SERPINB4	1204	0	1	7
SSX1	511	0	1	7
ZNF703	554	0	1	7
APOBEC3B	521	0	2	5
FGF19	1129	0	0	7
FGF3	1957	0	1	6
HMGA1	241	0	0	7
HOXB13	1369	0	1	6
HOXC13	542	0	1	6
HSD3B1	805	0	1	6
MNX1	462	0	0	7
TFPT	405	0	0	7
UBA1	977	0	1	6
AKT1S1	353	0	0	6
ARFRP1	353	0	1	5
CRLF2	1792	0	0	6
CYSLTR2	1387	0	1	5
DDX41	1038	0	0	6
HFE	518	0	1	5
HOXA11	503	0	1	5
LMO2	511	0	1	5
MDS2	426	0	1	5
MPEG1	1265	0	3	3
MYCL	1208	0	0	6
MYD88	1999	1	1	4
PCBP1	600	0	3	3
RASGEF1A	973	0	3	3
SDC4	442	0	0	6
SOCS2	395	0	0	6
UCHL1	355	0	2	4
AIP	413	0	1	4
BABAM1	944	0	0	5
CD70	562	0	1	4
CD79B	1522	0	0	5
DLL3	838	0	0	5
DUSP2	600	0	1	4
NFE2	674	0	1	4
NKX3-1	1110	0	2	3
POU5F1	328	0	0	5
PTP4A1	791	0	0	5
SIX1	582	0	1	4
TCL1A	449	0	0	5
TCL1B	389	0	0	5
TLX1	415	0	3	2
AURKC	741	0	1	3
CHCHD7	224	0	1	3
FANCG	700	0	0	4
FGF8	358	0	0	4
FOXF1	712	0	1	3
IL10	929	0	3	1
KCNJ5	983	0	1	3
LYL1	293	0	0	4
MUC1	784	0	1	3
PAX8	1094	0	1	3
PMAIP1	294	0	0	4
RAB35	894	0	1	3
RAC2	887	0	0	4
RNASEH2A	415	0	0	4
S1PR2	529	0	1	3
TACSTD2	370	0	0	4
TYMS	402	0	0	4
TYRO3	1186	0	0	4
ATP6AP1	556	0	0	3
DDIT3	257	0	1	2
DKK4	330	0	0	3
ERCC1	674	0	0	3
HERPUD1	483	0	0	3
IRF1	539	0	0	3
MAFB	486	0	0	3
NUTM2A	229	0	1	2
RPL10	407	0	0	3
WAS	718	1	0	2
AAMP	422	0	0	2
ADGRA2	22	0	0	2
ADGRG4	88	0	1	1
APH1A	361	0	0	2
EXOSC6	137	0	1	1
FOLR1	406	0	0	2
GADD45B	227	0	0	2
IL3	342	0	0	2
RRAS	760	0	0	2
SERP2	195	0	0	2
CDKN1C	210	0	0	1
FCGR2B	554	0	0	1
HOXA13	485	0	0	1
HOXC11	503	0	0	1
ID1	345	0	0	1
IL2	327	0	0	1
LTB	439	0	0	1
MAP3K21	11	0	0	1
OLIG2	442	0	0	1
PAK5	41	0	0	1
RMI2	290	0	0	1
SSX4	91	0	0	1
TLX3	560	0	0	1

Performance

Study	Variants	Sequential	Seq v/s	Parallel	Par v/s	Speedup
acbc_mskcc_2015	254	10ms	25644	8ms	32135	1.25x
acc_2019	10867	605ms	17973	311ms	34904	1.94x
acc_tcga	20166	949ms	21258	465ms	43397	2.04x
acc_tcga_pan_can_atlas_2018	11660	523ms	22283	299ms	39044	1.75x
acyc_fmi_2014	29	1ms	27283	1ms	42053	1.54x
acyc_jhu_2016	396	30ms	13204	10ms	39730	3.01x
acyc_mda_2015	815	45ms	18205	18ms	44072	2.42x
acyc_mgh_2016	1454	77ms	18951	35ms	41298	2.18x
acyc_mskcc_2013	708	32ms	22085	21ms	33070	1.50x
acyc_sanger_2013	310	14ms	21863	9ms	33181	1.52x
all_phase2_target_2018_pub	764	35ms	21778	19ms	40653	1.87x
all_stjude_2013	735	79ms	9296	32ms	23216	2.50x
all_stjude_2015	80	7ms	11890	6ms	12926	1.09x
all_stjude_2016	1271	63ms	20203	26ms	49436	2.45x
aml_ohsu_2018	9910	406ms	24435	158ms	62628	2.56x
aml_ohsu_2022	11967	453ms	26427	292ms	41049	1.55x
aml_stjude_2024	1698	61ms	27638	49ms	34953	1.26x
aml_target_2018_pub	557	18ms	30120	14ms	40162	1.33x
ampca_bcm_2016	28748	1.401s	20518	634ms	45345	2.21x
angs_painter_2025	18814	833ms	22581	422ms	44590	1.97x
angs_project_painter_2018	24058	827ms	29106	393ms	61156	2.10x
appendiceal_msk_2022	1084	64ms	16916	27ms	39782	2.35x
asclc_msk_2024	240	8ms	29812	4ms	64431	2.16x
bcc_unige_2016	234453	10.121s	23166	5.024s	46665	2.01x
bfn_duke_nus_2015	417	27ms	15336	10ms	40078	2.61x
biliary_tract_summit_2022	192	8ms	24352	9ms	22419	0.92x
bladder_columbia_msk_2018	3629	183ms	19816	112ms	32347	1.63x
bladder_msk_2023	7000	246ms	28416	178ms	39218	1.38x
blca_bcan_hcrn_2022	5607	307ms	18244	208ms	26896	1.47x
blca_bgi	11239	597ms	18819	247ms	45582	2.42x
blca_cornell_2016	19392	766ms	25326	442ms	43880	1.73x
blca_dfarber_mskcc_2014	21365	1.121s	19059	416ms	51303	2.69x
blca_msk_2024	3819	132ms	28940	105ms	36336	1.26x
blca_msk_tcga_2020	133882	5.28s	25358	2.879s	46500	1.83x
blca_mskcc_solit_2012	103	7ms	14614	6ms	17163	1.17x
blca_mskcc_solit_2014	1177	76ms	15580	26ms	44720	2.87x
blca_nmibc_2017	1609	72ms	22459	31ms	51571	2.30x
blca_pdx_msk_2025	2550	108ms	23719	53ms	48008	2.02x
blca_plasmacytoid_mskcc_2016	463	21ms	22581	12ms	40113	1.78x
blca_tcga	39312	1.679s	23415	995ms	39514	1.69x
blca_tcga_pan_can_atlas_2018	154702	6.738s	22961	3.838s	40310	1.76x
blca_tcga_pub_2017	131660	6.819s	19309	4.453s	29563	1.53x
blca_tcga_pub	39326	1.324s	29708	773ms	50906	1.71x
bm_nsclc_mskcc_2023	4312	202ms	21326	91ms	47611	2.23x
bowel_colitis_msk_2022	1896	78ms	24306	50ms	37917	1.56x
braf_msk_impact_2024	794	30ms	26217	27ms	29017	1.11x
brain_cptac_2020	9951	416ms	23903	257ms	38704	1.62x
brca_bccrc	2397	110ms	21787	79ms	30226	1.39x
brca_bccrc_xenograft_2014	18689	799ms	23392	572ms	32648	1.40x
brca_broad	4985	360ms	13838	174ms	28693	2.07x
brca_cptac_2020	29018	1.475s	19669	877ms	33075	1.68x
brca_dfci_2020	13613	517ms	26323	423ms	32204	1.22x
brca_dldccc_2022	24511	1.338s	18319	585ms	41895	2.29x
brca_fuscc_2020	625	22ms	27780	18ms	33802	1.22x
brca_hta9_htan_2022	2103	81ms	26052	67ms	31325	1.20x
brca_igr_2015	22949	1.121s	20466	751ms	30574	1.49x
brca_jup_msk_2020	104	5ms	22958	3ms	40056	1.74x
brca_mapk_hp_msk_2021	637	28ms	22956	20ms	32629	1.42x
brca_mbcproject_2022	55971	2.948s	18985	1.614s	34674	1.83x
brca_mbcproject_wagle_2017	24027	1.351s	17791	1s	24018	1.35x
brca_metabric	17272	778ms	22204	317ms	54455	2.45x
brca_mskcc_2019	658	19ms	33978	14ms	46183	1.36x
brca_pareja_msk_2020	3694	139ms	26543	117ms	31529	1.19x
brca_sanger	7239	290ms	24937	174ms	41647	1.67x
brca_smc_2018	6885	255ms	26964	193ms	35744	1.33x
brca_tcga	90490	4.646s	19475	2.446s	36988	1.90x
brca_tcga_pan_can_atlas_2018	130495	6.065s	21516	3.063s	42606	1.98x
brca_tcga_pub2015	69968	2.873s	24351	1.564s	44725	1.84x
brca_tcga_pub	33990	1.5s	22659	835ms	40688	1.80x
breast_alpelisib_2020	833	27ms	31290	16ms	52809	1.69x
breast_ink4_msk_2021	8182	429ms	19059	170ms	48005	2.52x
breast_msk_2018	9314	356ms	26128	223ms	41822	1.60x
ccle_broad_2019	1212258	50.661s	23929	25.957s	46703	1.95x
ccle_genentech_2014	265375	11.72s	22643	6.546s	40543	1.79x
ccrcc_dfci_2019	4146	160ms	25985	104ms	40004	1.54x
ccrcc_irc_2014	3444	148ms	23299	114ms	30231	1.30x
ccrcc_sjuh_2023	1476	56ms	26213	45ms	33069	1.26x
ccrcc_utokyo_2013	76105	1.684s	45205	1.471s	51743	1.14x
cellline_ccle_broad	91417	2.628s	34780	1.389s	65834	1.89x
cellline_nci60	74150	2.955s	25096	1.299s	57078	2.27x
cervix_msk_2023	1071	41ms	26114	16ms	66529	2.55x
cesc_tcga	46547	1.44s	32330	770ms	60446	1.87x
cesc_tcga_pan_can_atlas_2018	100786	3.638s	27707	1.584s	63641	2.30x
cfdna_msk_2019	3889	87ms	44660	54ms	71909	1.61x
chl_sccc_2023	6812	206ms	33072	98ms	69299	2.10x
chol_icgc_2017	5107	190ms	26908	74ms	68563	2.55x
chol_jhu_2013	1980	83ms	23884	57ms	34593	1.45x
chol_msk_2018	767	35ms	21629	10ms	75803	3.50x
chol_nccs_2013	243	10ms	24254	5ms	52439	2.16x
chol_nus_2012	205	5ms	38561	3ms	69006	1.79x
chol_tcga	6755	165ms	40825	90ms	75261	1.84x
chol_tcga_pan_can_atlas_2018	4500	115ms	39120	63ms	70889	1.81x
cll_broad_2015	12614	295ms	42800	174ms	72312	1.69x
cll_broad_2022	40401	1.306s	30943	537ms	75284	2.43x
cll_iuopa_2015	13631	356ms	38276	213ms	63907	1.67x
cllsll_icgc_2011	1110	35ms	32057	13ms	87727	2.74x
coad_caseccc_2015	2696	69ms	39314	35ms	76409	1.94x
coad_cptac_2019	73833	2.483s	29740	1.48s	49891	1.68x
coad_silu_2022	140127	4.809s	29140	2.291s	61170	2.10x
coadread_cass_2020	50415	1.67s	30181	869ms	58030	1.92x
coadread_dfci_2016	331423	9.764s	33943	4.536s	73058	2.15x
coadread_genentech	36271	1.293s	28058	833ms	43538	1.55x
coadread_mskcc	781	15ms	51095	9ms	89222	1.75x
coadread_mskresistance_2022	9342	310ms	30167	156ms	59940	1.99x
coadread_tcga	84595	2.316s	36526	1.169s	72372	1.98x
coadread_tcga_pan_can_atlas_2018	332610	11.109s	29941	5.657s	58798	1.96x
coadread_tcga_pub	92132	2.533s	36368	1.373s	67125	1.85x
crc_apc_impact_2020	4593	115ms	40094	68ms	67208	1.68x
crc_dd_2022	1823	53ms	34132	22ms	81087	2.38x
crc_eo_2020	20198	650ms	31085	390ms	51812	1.67x
crc_hta11_htan_2021	53025	1.479s	35858	772ms	68650	1.91x
crc_hta8_htan_2024	187	7ms	25763	4ms	51148	1.99x
crc_msk_2017	18145	528ms	34373	399ms	45451	1.32x
crc_nigerian_2020	1571	56ms	28201	41ms	38297	1.36x
crc_orion_2024	1062	37ms	28827	18ms	59871	2.08x
crc_sysucc_2022	356876	12.089s	29520	6.688s	53360	1.81x
cscc_dfarber_2015	2757	95ms	28956	52ms	52695	1.82x
cscc_hgsc_bcm_2014	108034	3.033s	35620	1.543s	70034	1.97x
cscc_ucsf_2021	146195	4.065s	35965	1.982s	73747	2.05x
csf_msk_2024	3944	114ms	34466	189ms	20867	0.61x
ctcl_columbia_2015	2473	82ms	30028	32ms	76701	2.55x
desm_broad_2015	28331	815ms	34757	436ms	65048	1.87x
difg_glass_2019	2402922	51.445s	46708	20.863s	115178	2.47x
difg_glass	1528395	31.891s	47925	14.703s	103952	2.17x
difg_msk_2023	1194	35ms	34184	13ms	90989	2.66x
dlbc_broad_2012	11655	260ms	44913	105ms	111466	2.48x
dlbc_tcga	16918	400ms	42314	236ms	71707	1.69x
dlbc_tcga_pan_can_atlas_2018	7784	193ms	40425	73ms	106204	2.63x
dlbcl_dfci_2018	20328	641ms	31716	242ms	83979	2.65x
dlbcl_duke_2017	7105	127ms	55984	101ms	70474	1.26x
egc_msk_2017	2245	59ms	38086	26ms	85955	2.26x
egc_msk_2023	7480	213ms	35046	82ms	90954	2.60x
egc_msk_tp53_ccr_2022	2126	57ms	37093	22ms	98325	2.65x
egc_mskcc_2020	3415	96ms	35603	42ms	80850	2.27x
egc_tmucih_2015	13866	360ms	38552	148ms	93810	2.43x
egc_trap_ccr_msk_2023	14703	497ms	29590	184ms	80027	2.70x
egc_trap_msk_2020	6532	180ms	36387	91ms	71888	1.98x
es_dfarber_broad_2014	15232	389ms	39152	159ms	95999	2.45x
es_dsrct_msk_2023	334	8ms	41760	6ms	51983	1.24x
es_iocurie_2014	2043	46ms	44269	20ms	101028	2.28x
esca_broad	31023	822ms	37744	360ms	86241	2.28x
esca_tcga	58602	1.507s	38893	695ms	84338	2.17x
esca_tcga_pan_can_atlas_2018	47781	1.232s	38775	523ms	91344	2.36x
escc_icgc	7279	195ms	37342	83ms	87371	2.34x
escc_ucla_2014	3032	110ms	27503	35ms	87601	3.19x
gbc_msk_2018	819	20ms	40759	9ms	90492	2.22x
gbc_mskcc_2022	1653	40ms	41328	20ms	82922	2.01x
gbc_shanghai_2014	5265	129ms	40955	59ms	89716	2.19x
gbm_columbia_2019	863	35ms	24912	9ms	99521	3.99x
gbm_cptac_2021	6667	158ms	42270	63ms	105930	2.51x
gbm_mayo_pdx_sarkaria_2019	193393	4.499s	42985	2.137s	90490	2.11x
gbm_tcga	22073	584ms	37783	241ms	91432	2.42x
gbm_tcga_pan_can_atlas_2018	68802	1.758s	39137	814ms	84480	2.16x
gbm_tcga_pub2013	16325	513ms	31792	224ms	72831	2.29x
gbm_tcga_pub	452	17ms	26141	5ms	100379	3.84x
gct_msk_2016	334	8ms	43073	3ms	113951	2.65x
gct_msk_2020	291	8ms	37812	4ms	65129	1.72x
gist_msk_2022	1079	29ms	37329	15ms	71906	1.93x
gist_msk_2023	992	24ms	41925	9ms	114150	2.72x
glioma_msk_2018	2385	54ms	44401	21ms	114448	2.58x
glioma_mskcc_2019	8905	221ms	40274	95ms	93994	2.33x
hcc_clca_2024	283223	6.221s	45525	2.998s	94464	2.08x
hcc_inserm_fr_2015	28170	640ms	44040	300ms	93899	2.13x
hcc_jcopo_msk_2023	425	11ms	39516	3ms	125538	3.18x
hcc_meric_2021	24488	649ms	37721	289ms	84762	2.25x
hcc_msk_2024	6800	172ms	39453	80ms	84541	2.14x
hcc_msk_venturaa_2018	67	1ms	45165	1ms	100256	2.22x
hcc_mskimpact_2018	605	15ms	40217	7ms	82073	2.04x
hccihch_pku_2019	17544	456ms	38484	189ms	92608	2.41x
heme_msk_impact_2022	12893	310ms	41536	135ms	95249	2.29x
hgsoc_msk_2021	183	6ms	32590	2ms	107685	3.30x
histiocytosis_cobi_msk_2019	419	18ms	23082	6ms	66582	2.88x
hnc_mskcc_2016	1390	43ms	32149	13ms	105301	3.28x
hnsc_broad	9603	358ms	26844	120ms	79737	2.97x
hnsc_jhu	601	14ms	43113	5ms	110384	2.56x
hnsc_mdanderson_2013	3471	100ms	34785	59ms	58873	1.69x
hnsc_tcga	120402	3.414s	35265	1.536s	78403	2.22x
hnsc_tcga_pan_can_atlas_2018	124375	3.374s	36858	1.533s	81130	2.20x
hnsc_tcga_pub	52669	1.592s	33074	728ms	72357	2.19x
ihch_ismms_2015	217	5ms	44928	2ms	112063	2.49x
ihch_msk_2021	1628	54ms	30024	19ms	84072	2.80x
ihch_mskcc_2020	805	26ms	30897	14ms	59196	1.92x
ihch_smmu_2014	9713	253ms	38422	106ms	91224	2.37x
ilc_msk_2023	91	3ms	30368	1ms	86147	2.84x
kich_tcga	7559	267ms	28327	88ms	85855	3.03x
kich_tcga_pan_can_atlas_2018	3268	94ms	34905	52ms	63122	1.81x
kich_tcga_pub	1787	67ms	26864	21ms	83460	3.11x
kirc_bgi	532	15ms	36621	5ms	99630	2.72x
kirc_tcga	47012	1.267s	37119	529ms	88904	2.40x
kirc_tcga_pan_can_atlas_2018	31073	867ms	35835	512ms	60701	1.69x
kirc_tcga_pub	37725	985ms	38289	416ms	90753	2.37x
kirp_tcga	18878	506ms	37320	246ms	76700	2.06x
kirp_tcga_pan_can_atlas_2018	34374	914ms	37608	478ms	71936	1.91x
laml_tcga	2584	68ms	38057	27ms	94947	2.49x
laml_tcga_pan_can_atlas_2018	10847	311ms	34843	116ms	93522	2.68x
laml_tcga_pub	2532	66ms	38491	24ms	103405	2.69x
lcll_broad_2013	3125	80ms	39274	31ms	100940	2.57x
lgg_tcga	9885	252ms	39151	111ms	89287	2.28x
lgg_tcga_pan_can_atlas_2018	39299	1.059s	37110	527ms	74595	2.01x
lgg_ucsf_2014	15155	460ms	32914	181ms	83518	2.54x
lgggbm_tcga_pub	30729	1.067s	28795	459ms	66924	2.32x
lgsoc_mapk_msk_2022	202	4ms	47122	2ms	100799	2.14x
liad_inserm_fr_2014	1177	31ms	37707	15ms	80463	2.13x
lihc_amc_prv	27580	783ms	35211	383ms	72038	2.05x
lihc_riken	53	2ms	31467	1ms	46741	1.49x
lihc_tcga	53777	1.452s	37027	639ms	84174	2.27x
lihc_tcga_pan_can_atlas_2018	60145	1.572s	38257	794ms	75769	1.98x
luad_broad	65767	1.646s	39948	794ms	82793	2.07x
luad_cas_2020	17917	553ms	32394	195ms	91713	2.83x
luad_cptac_2020	31963	760ms	42052	372ms	85893	2.04x
luad_msk_npjpo_2021	3579	94ms	38013	41ms	86296	2.27x
luad_mskcc_2015	9049	241ms	37625	98ms	92402	2.46x
luad_mskcc_2020	4814	114ms	42152	57ms	83758	1.99x
luad_mskcc_2023_met_organotropism	113828	2.631s	43257	1.258s	90456	2.09x
luad_mskimpact_2021	1030	25ms	40894	10ms	100904	2.47x
luad_oncosg_2020	73678	1.753s	42019	807ms	91268	2.17x
luad_tcga	72541	1.949s	37211	901ms	80487	2.16x
luad_tcga_pan_can_atlas_2018	243229	6.549s	37142	2.866s	84862	2.28x
luad_tcga_pub	72566	2.211s	32825	1.049s	69149	2.11x
luad_tsp	1017	33ms	30507	12ms	85667	2.81x
lung_msk_2017	7181	172ms	41872	66ms	108971	2.60x
lung_msk_mind_2020	2951	69ms	43079	28ms	104746	2.43x
lung_msk_pdx	3914	113ms	34693	44ms	89860	2.59x
lung_nci_2022	8786	230ms	38225	91ms	96036	2.51x
lung_pdx_msk_2021	798	17ms	46597	6ms	124070	2.66x
lung_smc_2016	4074	86ms	47434	45ms	91303	1.92x
lusc_cptac_2021	35442	965ms	36744	480ms	73831	2.01x
lusc_tcga	65305	1.625s	40193	779ms	83820	2.09x
lusc_tcga_pan_can_atlas_2018	199105	5.116s	38919	2.393s	83197	2.14x
lusc_tcga_pub	73018	2.215s	32962	1.023s	71361	2.16x
lymphoma_cellline_msk_2020	1119	30ms	37883	12ms	94106	2.48x
makeanimpact_ccr_2023	254	7ms	36860	3ms	72777	1.97x
mbc_msk_2021	510	12ms	41086	5ms	94727	2.31x
mbl_broad_2012	1808	57ms	31572	24ms	76364	2.42x
mbl_dkfz_2017	2200	60ms	36507	27ms	82338	2.26x
mbl_icgc	1059	27ms	38621	11ms	96407	2.50x
mbl_pcgp	558	12ms	44746	5ms	115826	2.59x
mbl_sickkids_2016	4779	114ms	42066	50ms	96398	2.29x
mbn_mdacc_2013	45470	838ms	54271	438ms	103864	1.91x
mbn_msk_2024	5711	121ms	47188	51ms	111443	2.36x
mcl_idibips_2013	653	15ms	44201	8ms	77182	1.75x
mds_iwg_2022	15685	379ms	41407	164ms	95700	2.31x
mds_mskcc_2020	46861	1.304s	35933	616ms	76110	2.12x
mds_tokyo_2011	261	6ms	40156	2ms	111834	2.78x
mel_dfci_2019	134039	3.396s	39469	1.483s	90392	2.29x
mel_mskimpact_2020	19478	469ms	41514	205ms	95192	2.29x
mel_tsam_liang_2017	33022	704ms	46897	300ms	110215	2.35x
mel_ucla_2016	26264	589ms	44609	259ms	101266	2.27x
meso_tcga	6171	188ms	32779	91ms	67779	2.07x
meso_tcga_pan_can_atlas_2018	3980	107ms	37090	43ms	92276	2.49x
metastatic_solid_tumors_mich_2017	87070	2.177s	39995	978ms	89053	2.23x
mixed_allen_2018	167307	4.181s	40019	1.974s	84762	2.12x
mixed_cfdna_msk_2020	1803	41ms	43730	21ms	85926	1.96x
mixed_impact_subset_2022	441	11ms	40286	5ms	86443	2.15x
mixed_kunga_msk_2022	337	10ms	35385	4ms	80165	2.27x
mixed_msk_tcga_2021	2150	49ms	43511	24ms	89421	2.06x
mixed_pipseq_2017	52588	1.278s	41141	628ms	83694	2.03x
mm_broad	11142	344ms	32425	140ms	79305	2.45x
mng_utoronto_2021	1534	44ms	35088	19ms	79232	2.26x
mnm_washu_2016	801	18ms	44771	7ms	116607	2.60x
mpcproject_broad_2021	18539	718ms	25834	392ms	47334	1.83x
mpn_cimr_2013	1496	39ms	37907	16ms	96428	2.54x
mpnst_mskcc	4567	90ms	50963	42ms	107597	2.11x
mrt_bcgsc_2016	851	25ms	34219	8ms	108560	3.17x
msk_access_2021	7358	177ms	41599	74ms	99555	2.39x
msk_ch_2020	11076	198ms	55942	98ms	113426	2.03x
msk_ch_2023	30074	779ms	38606	407ms	73806	1.91x
msk_ch_ped_2021	40	1ms	42254	0s	123681	2.93x
msk_chord_2024	208544	5.47s	38125	2.608s	79973	2.10x
msk_ctdna_vte_2024	10590	246ms	43096	110ms	96326	2.24x
msk_impact_2017	78263	1.937s	40406	1.01s	77479	1.92x
msk_impact_50k_2026	479096	12.183s	39326	5.5s	87107	2.22x
msk_met_2021	230419	6.139s	37534	2.776s	83015	2.21x
msk_spectrum_tme_2022	288	7ms	39933	3ms	99722	2.50x
mtnn_msk_2022	646	14ms	46496	6ms	99953	2.15x
nbl_amc_2012	568	15ms	38982	5ms	114864	2.95x
nbl_broad_2013	5291	132ms	40211	58ms	90934	2.26x
nbl_target_2018_pub	1035	20ms	52265	11ms	98206	1.88x
nbl_ucologne_2015	920	25ms	37323	9ms	102843	2.76x
nccrcc_genentech_2014	4708	132ms	35698	50ms	93892	2.63x
nepc_wcm_2016	7363	179ms	41066	75ms	98662	2.40x
nhl_bcgsc_2011	716	19ms	37265	7ms	106262	2.85x
nhl_bcgsc_2013	9846	237ms	41514	135ms	72914	1.76x
normal_skin_fibroblast_2024	3006	83ms	36309	29ms	102454	2.82x
normal_skin_keratinocytes_2024	25824	664ms	38913	261ms	98919	2.54x
normal_skin_melanocytes_2024	76480	1.943s	39371	855ms	89491	2.27x
npc_nusingapore	1575	42ms	37825	18ms	89363	2.36x
nsclc_ctdx_msk_2022	9733	215ms	45203	88ms	110433	2.44x
nsclc_mskcc_2015	4180	102ms	41090	43ms	97939	2.38x
nsclc_mskcc_2018	61014	1.451s	42048	612ms	99747	2.37x
nsclc_pd1_msk_2018	2517	56ms	45117	26ms	96235	2.13x
nsclc_tcga_broad_2016	393371	11.937s	32954	5.385s	73046	2.22x
nsclc_tracerx_2017	209018	5.432s	38481	2.437s	85776	2.23x
nsclc_unito_2016	124	3ms	37214	1ms	122693	3.30x
ntrk_msk_2019	440	12ms	37473	5ms	93434	2.49x
odg_msk_2017	281	6ms	43747	3ms	109079	2.49x
ov_tcga	20215	501ms	40382	206ms	98252	2.43x
ov_tcga_pan_can_atlas_2018	53204	1.454s	36593	664ms	80177	2.19x
ov_tcga_pub	19420	573ms	33896	221ms	87820	2.59x
paac_jhu_2014	2745	70ms	39382	25ms	108959	2.77x
paac_msk_jco_2023	285	7ms	41692	3ms	103741	2.49x
paad_cptac_2021	6327	184ms	34451	177ms	35649	1.03x
paad_icgc	2627	67ms	39306	23ms	115557	2.94x
paad_qcmg_uq_2016	23536	581ms	40500	265ms	88904	2.20x
paad_tcga	30357	885ms	34306	392ms	77480	2.26x
paad_tcga_pan_can_atlas_2018	31394	815ms	38517	343ms	91551	2.38x
paad_utsw_2015	7259	186ms	39077	74ms	98103	2.51x
pact_jhu_2011	444	10ms	44759	4ms	107892	2.41x
paired_bladder_2022	29264	795ms	36815	317ms	92255	2.51x
pan_origimed_2020	99895	2.69s	37134	1.177s	84865	2.29x
pancan_mimsi_msk_2024	90454	2.427s	37273	1.155s	78316	2.10x
pancan_pcawg_2020	382937	9.233s	41474	4.168s	91871	2.22x
pancreas_msk_2024	1609	41ms	39001	14ms	111110	2.85x
panet_arcnet_2017	3097	78ms	39926	35ms	87489	2.19x
panet_jhu_2011	157	6ms	24541	4ms	41054	1.67x
panet_msk_2018	921	39ms	23317	11ms	84767	3.64x
panet_msk_erc_2023	683	24ms	28312	8ms	90737	3.20x
panet_shanghai_2013	78	2ms	41259	1ms	87377	2.12x
past_dkfz_heidelberg_2013	236	8ms	28920	3ms	90759	3.14x
pcnsl_mayo_2015	1560	47ms	33490	14ms	109753	3.28x
pcnsl_msk_2024	1433	75ms	19121	62ms	23005	1.20x
pcpg_tcga	4662	129ms	36180	52ms	90391	2.50x
pcpg_tcga_pan_can_atlas_2018	2666	74ms	36182	29ms	91447	2.53x
pcpg_tcga_pub	3664	116ms	31497	66ms	55823	1.77x
pdac_msk_2024	10603	239ms	44314	104ms	102341	2.31x
pediatric_dkfz_2017	17989	562ms	32024	207ms	86759	2.71x
plmeso_msk_2024	181	5ms	37457	3ms	59385	1.59x
plmeso_nyu_2015	517	14ms	38217	5ms	108093	2.83x
pog570_bcgsc_2020	8141138	2m17.752s	59100	1m4.783s	125667	2.13x
pptc_2019	42900	926ms	46338	462ms	92837	2.00x
prad_broad_2013	2755	91ms	30175	32ms	85686	2.84x
prad_broad	5764	151ms	38172	84ms	68486	1.79x
prad_cdk12_mskcc_2020	4097	92ms	44507	37ms	112060	2.52x
prad_cpcg_2017	6152	127ms	48364	56ms	110014	2.27x
prad_eururol_2017	50803	1.103s	46058	498ms	102038	2.22x
prad_fhcrc	32763	709ms	46189	347ms	94495	2.05x
prad_mcspc_mskcc_2020	1866	62ms	29875	18ms	101857	3.41x
prad_mich	3853	113ms	33950	47ms	82428	2.43x
prad_msk_2019	49	1ms	34987	0s	100900	2.88x
prad_msk_mdanderson_2023	129756	2.452s	52914	1.131s	114761	2.17x
prad_msk_stopsack_2021	9005	238ms	37759	92ms	97978	2.59x
prad_mskcc_2017	1709	45ms	37734	15ms	113888	3.02x
prad_mskcc_cheny1_organoids_2014	983	27ms	36776	8ms	119386	3.25x
prad_mskcc	320	9ms	35718	4ms	75409	2.11x
prad_organoids_msk_2022	13362	324ms	41214	134ms	99533	2.42x
prad_p1000	95337	2.273s	41939	1.146s	83176	1.98x
prad_pik3r1_msk_2021	4473	129ms	34686	48ms	92570	2.67x
prad_su2c_2015	38586	1.076s	35875	419ms	92077	2.57x
prad_su2c_2019	64566	1.406s	45914	695ms	92866	2.02x
prad_tcga	40731	1.115s	36545	553ms	73649	2.02x
prad_tcga_pan_can_atlas_2018	34192	890ms	38409	441ms	77582	2.02x
prad_tcga_pub	14045	458ms	30675	164ms	85523	2.79x
prostate_dkfz_2018	1011490	18.739s	53978	9.354s	108140	2.00x
prostate_msk_2024	10845	277ms	39094	116ms	93318	2.39x
prostate_pcbm_swiss_2019	27134	740ms	36659	333ms	81440	2.22x
ptad_msk_2024	861	21ms	41502	9ms	100048	2.41x
rbl_cfdna_msk_2020	35940	460ms	78081	220ms	163375	2.09x
rbl_mskcc_2020	278	6ms	49335	2ms	124536	2.52x
rectal_msk_2019	3222	79ms	40837	34ms	95021	2.33x
rectal_msk_2022	36742	1.044s	35207	419ms	87623	2.49x
rms_msk_2023	22	1ms	36695	0s	123966	3.38x
rms_nih_2014	641	22ms	28879	8ms	85276	2.95x
rt_target_2018_pub	122	4ms	32843	1ms	124326	3.79x
sarc_mskcc	45	1ms	39384	0s	108922	2.77x
sarc_tcga	20376	542ms	37581	252ms	80858	2.15x
sarc_tcga_pan_can_atlas_2018	31484	783ms	40216	328ms	96057	2.39x
sarc_tcga_pub	12877	343ms	37594	133ms	96991	2.58x
sarcoma_msk_2022	11535	360ms	31999	113ms	102091	3.19x
sarcoma_msk_2023	326	11ms	28489	4ms	81927	2.88x
sarcoma_ucla_2024	467	11ms	40837	4ms	116629	2.86x
scco_mskcc	19	1ms	31363	0s	62356	1.99x
sclc_cancercell_gardner_2017	127020	2.822s	45012	1.39s	91392	2.03x
sclc_clcgp	8723	232ms	37633	94ms	93155	2.48x
sclc_jhu	7977	180ms	44210	84ms	95513	2.16x
sclc_uc_2024	28805	641ms	44918	302ms	95480	2.13x
sft_sysucc_2023	1282	30ms	42742	11ms	114428	2.68x
skcm_broad_brafresist_2012	47618	1.326s	35899	520ms	91554	2.55x
skcm_broad	239255	5.526s	43292	2.697s	88700	2.05x
skcm_broad_dfarber	9318	233ms	40014	156ms	59861	1.50x
skcm_dfci_2015	54242	1.147s	47300	592ms	91647	1.94x
skcm_mskcc_2014	38543	810ms	47588	372ms	103721	2.18x
skcm_tcga	324158	8.729s	37137	3.968s	81688	2.20x
skcm_tcga_pan_can_atlas_2018	556864	12.399s	44913	6.114s	91082	2.03x
skcm_tcga_pub_2015	290341	7.91s	36703	3.641s	79741	2.17x
skcm_vanderbilt_mskcc_2015	822	24ms	34151	9ms	94149	2.76x
skcm_yale	26169	560ms	46706	250ms	104600	2.24x
soft_tissue_msk_2023	78	2ms	43538	1ms	117286	2.69x
stad_oncosg_2018	861309	21.399s	40250	8.854s	97282	2.42x
stad_pfizer_uhongkong	17901	415ms	43116	190ms	94310	2.19x
stad_tcga	209217	5.248s	39865	2.421s	86412	2.17x
stad_tcga_pan_can_atlas_2018	242605	6.331s	38319	3.113s	77928	2.03x
stad_tcga_pub	148520	3.862s	38455	1.776s	83611	2.17x
stad_uhongkong	7036	169ms	41744	77ms	91575	2.19x
stad_utokyo	6616	165ms	40178	65ms	101376	2.52x
stes_tcga_pub	241898	5.59s	43272	2.563s	94373	2.18x
summit_2018	1042	29ms	35700	10ms	109171	3.06x
tet_nci_2014	790	19ms	41878	12ms	64531	1.54x
tgct_tcga	14672	335ms	43804	166ms	88155	2.01x
tgct_tcga_pan_can_atlas_2018	3418	93ms	36562	37ms	92868	2.54x
thca_tcga	7458	206ms	36178	89ms	83943	2.32x
thca_tcga_pan_can_atlas_2018	11857	409ms	28978	182ms	65085	2.25x
thca_tcga_pub	6772	205ms	32968	83ms	81832	2.48x
thym_tcga	3064	82ms	37362	33ms	93075	2.49x
thym_tcga_pan_can_atlas_2018	4919	124ms	39529	54ms	90873	2.30x
thyroid_mskcc_2016	564	11ms	50475	4ms	126667	2.51x
tmb_mskcc_2018	20563	568ms	36224	221ms	93159	2.57x
uccc_nih_2017	1700	39ms	43317	16ms	109274	2.52x
ucec_ancestry_cds_msk_2023	15228	425ms	35816	177ms	86157	2.41x
ucec_ccr_cfdna_msk_2022	597	16ms	37710	7ms	84007	2.23x
ucec_cptac_2020	52063	1.318s	39501	620ms	83919	2.12x
ucec_msk_2018	2545	69ms	36635	31ms	80832	2.21x
ucec_msk_2024	1568	49ms	31789	18ms	86029	2.71x
ucec_tcga	184861	4.165s	44384	1.917s	96447	2.17x
ucec_tcga_pan_can_atlas_2018	935656	22.05s	42433	10.624s	88069	2.08x
ucec_tcga_pub	184826	4.663s	39640	2.16s	85565	2.16x
ucs_jhu_2014	19148	483ms	39675	186ms	103147	2.60x
ucs_msk_2024	3825	95ms	40319	39ms	97011	2.41x
ucs_tcga	11339	297ms	38115	124ms	91650	2.40x
ucs_tcga_pan_can_atlas_2018	10409	259ms	40123	107ms	97404	2.43x
um_qimr_2016	299	8ms	38253	4ms	84097	2.20x
urcc_mskcc_2016	159	7ms	24022	2ms	81567	3.40x
usarc_msk_2020	346	10ms	35930	3ms	116582	3.24x
utuc_cornell_baylor_mdacc_2019	4132	119ms	34676	55ms	74884	2.16x
utuc_igbmc_2021	4254	108ms	39441	41ms	103481	2.62x
utuc_msk_2019	2273	51ms	44160	24ms	93536	2.12x
utuc_mskcc_2015	1112	25ms	44991	13ms	87705	1.95x
utuc_pdx_msk_2019	2128	49ms	43444	23ms	92049	2.12x
uvm_tcga	2174	64ms	33717	23ms	93715	2.78x
uvm_tcga_pan_can_atlas_2018	1935	52ms	36952	21ms	91446	2.47x
vsc_cuk_2018	3037	68ms	44719	41ms	74672	1.67x
wt_target_2018_pub	882	22ms	40599	8ms	115457	2.84x
Total	30612130	12m32.598s	40675	5m59.873s	85064	2.09x

Reproducing Validation

# Download test data
make download-datahub-gdc     # 32 GDC studies (~5 GB)
make download-datahub-all     # 431+ studies (~50 GB, includes GRCh37)

# Download GENCODE reference
vibe-vep download --assembly GRCh38
vibe-vep download --assembly GRCh37   # only needed for GRCh37 benchmark

# Run fast benchmark (GDC only, ~2 min)
go test ./internal/output/ -run TestValidationBenchmarkGDC -v -count=1 -timeout 10m

# Run full benchmark (all assemblies, ~21 min)
go test ./internal/output/ -run 'TestValidationBenchmark(GDC|All|AllGRCh37)' -v -count=1 -timeout 120m

Full markdown reports are generated in each study directory:

testdata/datahub_gdc/validation_report.md — GRCh38 (32 GDC studies)
testdata/datahub_all/GRCh37/validation_report.md — GRCh37 (431 studies)