Metagenomic Annotation Workshop
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In this part of the metagenomics workshop we will:

- Translate nucleotides into amino acid seuquences using EMBOSS
- Annotate metagenomic reads with Pfam domains
- Discuss and perform normalization of metagenomic counts
- Take a look at different gene abundance analysis

The workshop has the following exercises:

1. Translation Exercise
2. HMMER Exercise
3. Normalization Exercise
4. Differential Exercise
5. BonusExercise: Metaxa2

At least a basic knowledge of how to work with the command line is required
otherwise it will be very difficult to follow some of the examples. Have
fun!

Contents:

.. toctree::
   :maxdepth: 2

   software
   translation
   annotation
   normalization
   differential
   metaxa2