Metagenomics

Dissecting microbial communties in silico

Ino de Bruijn / @inodb
Presentation at bit.ly/mgseminar

de Bruijn Graph

de Bruijn graph
  • cut up reads into overlapping kmers
  • unique kmers determine comp reqs

Purity noscaf recipes

purity hist

Purity thresholds

101 Species mock 96 samples

clusters

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